Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3485 |
Symbol | |
ID | 7972110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3674139 |
End bp | 3675335 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644794069 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002945368 |
Protein GI | 239816458 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.381916 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAACCA AGCTCAAAAT CATTGCTCTC ATGCTCGGGG CCGCGGGTCT TGCGAGCCAT GCCGTGCAGG CGCAGGAGAA GGTCGTCATC GGCTACATCA GCGACCTGTC GGGCCTGTAC GCCGACCTGG AAGGCAAGGG CGGCGCCACG GCCATCCAGA TGGCCATCGA CGACATGGGC GGCAAGGTGC TCGGCCAGCC GGTCGAGGTG CTGAGCGTCG ACCACCAGAA CAAGCCCGAC ATCGCGGCCT CGAAGGCGCG CGAGTGGATC GACACGGCGG GCGCCACGAT GATCTTCGCG GGCACCAATT CGGGCGTGGC GCTGGCCACT GCCAAGGTGG CGCAGGAAAA GAAGCGCGTG TTCTTCACCA ACGGCGCGGC CACCTCGGCG CTCACCAACG CGCAGTGCAG CCCCTACACC GTGCACTACG CCTACGACAC CGTCGCGCTC GCCAAGAGCA CCGGCGGCGC GGTGGTCGAC ACCGGCGGCA AGAGCTGGTT CTTCCTGACG GCCGACTATG CCTTCGGCCA TGCGCTCGAG GCCGACACCG CCAAGGTCGT CAAGGCCAAG GGCGGCTCGG TGGTGGGCAC GGTGCGGGCG CCGCTCAATG CGTCGGACTT CTCCTCCTTC CTGCTGCAGG CGCAGAACTC CAAGGCCCAG GTGCTGGGCC TGGCCAATGC CGGCGGCGAC TTCATCAACT CGATGAAGGC CTCGAAGGAA TTCGGAATCG ACAAGTCGAT GAAGATCGCG GGCCTGCTGG TGTTCCTCAC CGACGTCAAG AGCCTCGGCC TGCCGGCCAC GCAGGGCCTG TTGCACACCA CCAGCTGGTA TTGGGACGCC GACGACGAGT CGCGCAAGTG GGCCGCGCGC TACGAAGCCA AGACCAAGAA CAAGCCGACC GACATCCAGG CCGCCGACTA CTCGGCCACC ATGGCCTACC TCAAGGCCGT GGAAGCCGTG AAGAGCACCG ATGCCGACAA GGTCATGGCC TACCTCAAGA AGACGCCGAT CAACGACTTC TACGCCAAGG GCGTGATCCG CGCCGACGGC CGCATGGTGC ACGACATGCT GCTGGCCGAG GTCAAGAAGC CTTCGGAATC CAAGGGCCCC TGGGACCTGC TGAAGATCGT CAAGAAGGTG CCGGGCGACC AGGTCTACAC GACCAAGGAA GAAAGCACCT GCGCGCTGTG GAAGTAA
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Protein sequence | MQTKLKIIAL MLGAAGLASH AVQAQEKVVI GYISDLSGLY ADLEGKGGAT AIQMAIDDMG GKVLGQPVEV LSVDHQNKPD IAASKAREWI DTAGATMIFA GTNSGVALAT AKVAQEKKRV FFTNGAATSA LTNAQCSPYT VHYAYDTVAL AKSTGGAVVD TGGKSWFFLT ADYAFGHALE ADTAKVVKAK GGSVVGTVRA PLNASDFSSF LLQAQNSKAQ VLGLANAGGD FINSMKASKE FGIDKSMKIA GLLVFLTDVK SLGLPATQGL LHTTSWYWDA DDESRKWAAR YEAKTKNKPT DIQAADYSAT MAYLKAVEAV KSTDADKVMA YLKKTPINDF YAKGVIRADG RMVHDMLLAE VKKPSESKGP WDLLKIVKKV PGDQVYTTKE ESTCALWK
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