Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3439 |
Symbol | |
ID | 7972550 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3626570 |
End bp | 3627070 |
Gene Length | 501 bp |
Protein Length | 166 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644794023 |
Product | 17 kDa surface antigen |
Protein accession | YP_002945322 |
Protein GI | 239816412 |
COG category | [S] Function unknown |
COG ID | [COG3134] Predicted outer membrane lipoprotein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.976253 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATTT CAACGCGCTT CATTTCCATT GCCGCTTCCG TGGTGGCGCT TGCCACGCTC ACGGCCTGCG TTGCTCCCGC GCCGGTCTAT CACACGACGC GCTATCCCTA CCAGGCGCCG CCGCAGGCGG TGCCCTACCA GGAGGCGGCC TATGTCGAAT ACGGCCACGT CGCCAACATC GAGGTGCTGC GCAGCGAAAC CGGGGGCACC GGCACCACCG GCGGCGGCGC GGTGGCGGGC GGTGTGCTCG GCGGCGTGGT GGGCAACCAG TTCGGGCACG GCAGCGGCCG CGCCGCGGCC ACCGCGCTGG GCATCGTGGG CGGCGCGCTG CTGGGCAACA CCATCGAGGG ACAGGCCAAC GGGCCGCGCG CCTACGAGAG CTACCGCATC TCGGTGCAGA CCGACCGCGG CGGCTACCGT GCCTTCGACG TGCAGCATCC GGGCGACCTG CGCATCGGCG ACCGCGTGCG CATCGACAAC GGCCAGATCT CGCGCATGTA G
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Protein sequence | MKISTRFISI AASVVALATL TACVAPAPVY HTTRYPYQAP PQAVPYQEAA YVEYGHVANI EVLRSETGGT GTTGGGAVAG GVLGGVVGNQ FGHGSGRAAA TALGIVGGAL LGNTIEGQAN GPRAYESYRI SVQTDRGGYR AFDVQHPGDL RIGDRVRIDN GQISRM
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