| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3403 |
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| Symbol | |
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| ID | 7972514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3584618 |
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| End bp | 3586111 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793987 |
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| Product | protein of unknown function DUF404 |
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| Protein accession | YP_002945286 |
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| Protein GI | 239816376 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2308] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.562365 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACAAAT TCGACGAGAT GTATGAGCAG TTGCCCTATG CGGGGGCTGC AATCCGACAG
CACTACAAGC GCTACGACCA ATGGCTTGCG AAGCAACCCG GCGAGGTGAT GCGATCGCGG
CGCGAAGAGG CGGAAATGAT CTTCCGCCGG GTCGGCATCA CCTTTGCGGT GTACGGCGCC
AAGGACGAGG ACGGTTCCGG CACCGAGCGG CTCATACCGT TCGACCTGCT GCCGCGCATC
ATTCCGGCCC ACGAGTGGGA GAGCATGGAA AAGGGGCTGG TGCAGCGCGT GACGGCGCTC
AACCGCTTCC TGCATGACGT CTACCACGAC CAGGAAATCA TCAAGGCCGG CATCATTCCG
GCCGAGCAGA TACTGAACAA CGCGCAGTTC CGCCCCGAGA TGATGGGCGT CAACGTGCCG
CACAACGTGT ACTCCAACAT CTCGGGCATC GACATCGTGC GCGCCCCCGA TGCCCAGGGC
AACGGCGAGT ACTACGTGCT CGAGGACAAC CTGCGCGTGC CCAGCGGCGT GAGCTACATG
CTGGAGAACC GCAAGATGAT GATGCGGCTC TTCCCCGAGC TGTTCAACCA GAACCGCATC
GCGCCCGTGG CGCACTACCC CGACCTGCTG CTGGAAACGC TGCGCGCCAG CGCACCGCCC
GCCACGGCCG AGCCCACGGT GGTGGTGCTC ACGCCCGGCA TGTACAACAG CGCCTACTTT
GAGCACGCCT TCCTCGCCCA GCAGATGGGC GTGGAACTGG TCGAGGGGCA GGACCTGTTC
GTGAAGGACA ACTTCGTCTA CATGCGCACC ACGCGCGGGC CGCGGCGCGT GGACGTGATC
TACCGCCGCG TCGACGACGA CTTCCTCGAC CCGGAGGTCT TCCGCCCCAC CTCCACGCTC
GGCTGCGCGG GCCTGATGCG CGCCTACCGC GAAGGCAACG TCGTCATCTG CAATGCCGTG
GGCACGGGCG TGGCCGACGA CAAGTCGATC TACCCCTACG TGCCCAAGAT GGTCGAGTTC
TACCTCGGCG AAAAGCCGAT CCTGAAGAAC GTGCCCACCT ACATGTGCCG CAACAAGGAC
GAGCTGCAGT ACACGCTCGA CAACATGAAG GACCTGGTCG TGAAGGAGGT GCACGGCGCC
GGCGGCTACG GCATGCTGAT CGGCCCGGCC GCCACGCAGG CCGAGATCGA GGACTTCAAG
AAGGCCGTCA TCGCCAAGCC CGACGGCTAC ATCGCGCAGC CCACGCTGAG CCTGTCGACC
TCGCCGACCT TCGTCGATGC CGGCATTGCG CCGCGCCACA TCGACCTGCG CCCCTTCGTG
CTTTCGGGCA GCGAGGTGCA GATGGTGCCC GGCGGCCTCA CGCGCGTGGC GCTCAAGGAG
GGTTCGCTGG TGGTCAATTC ATCGCAGGGC GGCGGCACCA AGGACACCTG GATCCTGGAA
GCCGACCGCG CGCCCAGGCC CAACAAGGCG GCACAGTCGC AAAGCCAATC GTAG
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| Protein sequence | MHKFDEMYEQ LPYAGAAIRQ HYKRYDQWLA KQPGEVMRSR REEAEMIFRR VGITFAVYGA
KDEDGSGTER LIPFDLLPRI IPAHEWESME KGLVQRVTAL NRFLHDVYHD QEIIKAGIIP
AEQILNNAQF RPEMMGVNVP HNVYSNISGI DIVRAPDAQG NGEYYVLEDN LRVPSGVSYM
LENRKMMMRL FPELFNQNRI APVAHYPDLL LETLRASAPP ATAEPTVVVL TPGMYNSAYF
EHAFLAQQMG VELVEGQDLF VKDNFVYMRT TRGPRRVDVI YRRVDDDFLD PEVFRPTSTL
GCAGLMRAYR EGNVVICNAV GTGVADDKSI YPYVPKMVEF YLGEKPILKN VPTYMCRNKD
ELQYTLDNMK DLVVKEVHGA GGYGMLIGPA ATQAEIEDFK KAVIAKPDGY IAQPTLSLST
SPTFVDAGIA PRHIDLRPFV LSGSEVQMVP GGLTRVALKE GSLVVNSSQG GGTKDTWILE
ADRAPRPNKA AQSQSQS
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