Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3393 |
Symbol | |
ID | 7970631 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3572655 |
End bp | 3573467 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644793977 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002945276 |
Protein GI | 239816366 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0838291 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGATA AGAGATTCCG CAAACGCAGC ATCTTCCTGC TGCTGTACAT CCTGTTCGCG CTGCTGCCCA TCTACTGGAT GGTCAACATG AGCTTCAAGA CGAACGAGGA AATCGTCTCC AGCTTCTCGT TCTTTCCACA CGAGCTCACC TGGGCCAACT ACGCGCGCAT CTTCACCGAC GAGTCGTGGT ACTCGGGCTA CATCAACAGC CTGATCTACG TGGCCATCAA CACCGTGATC TCGCTCACCG TGGCGCTGCC GGCGGCGTAT GCGTTCTCGC GCTATTCGTT CCTCGGCGAC AAGCACGTCT TCTTCTGGCT GCTGACCAAC CGCATGACCC CGCCCGCGGT GTTCCTGCTG CCGTTCTTCC AGCTCTACAG CACCGTCGGC CTCATGGACA CCCACCTGGG CGTGGCGCTC GCGCACCTGC TGTTCAACGT GCCGCTGGCG GTGTGGATTC TCGAAGGCTT CATGAGCGGC ATTCCGCGCG AGATCGACGA GACGGCCTAC ATCGACGGCT ACTCGTTCCC GCGCTTCTTC GTGAAGATCT TCCTGCCGCT CATCAAGGCC GGCGTGGGCG TGGCGGCGTT CTTCTGCTTC ATGTTCAGCT GGGTCGAGCT GCTGCTCGCG CGCACGCTCA CCAGCGTGAA CGCCAAGCCC ATCGTCGCGA CCATGACCCG CACCGTGAGC GCCTCCGGCA TGGACTGGGC CACGCTGGCC GCCGCGGGCG TGCTCACCAT CGTGCCGGGT GCGATCGTGA TCTGGTTCGT GCGCCACTAC ATCGCAAAAG GCTTTGCGAT GGGTCGGGTC TAG
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Protein sequence | MNDKRFRKRS IFLLLYILFA LLPIYWMVNM SFKTNEEIVS SFSFFPHELT WANYARIFTD ESWYSGYINS LIYVAINTVI SLTVALPAAY AFSRYSFLGD KHVFFWLLTN RMTPPAVFLL PFFQLYSTVG LMDTHLGVAL AHLLFNVPLA VWILEGFMSG IPREIDETAY IDGYSFPRFF VKIFLPLIKA GVGVAAFFCF MFSWVELLLA RTLTSVNAKP IVATMTRTVS ASGMDWATLA AAGVLTIVPG AIVIWFVRHY IAKGFAMGRV
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