Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3376 |
Symbol | |
ID | 7970614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3555744 |
End bp | 3556697 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793960 |
Product | Histone deacetylase |
Protein accession | YP_002945259 |
Protein GI | 239816349 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.104662 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCAAGA CCGGCTACTT CACACATCGC GATTGCTGGA AGCACGACAT GGGCCGGGGC CACCCCGAAT GTCCCGAACG GCTCGACGCC ATCGAGGACA GGCTGCTGCT CACCGGCGTG GGCGATGCCC TCGAACACCG CGACGTGCCG CTGGCCACCC TGGCCCAGAT CACCCGCGCA CACAGCGAGG CGCATCTCGA ACACCTCGAA TCGCTGCACC AGCGCCTGGT GGCAGACGAG CCGGCGGGCG GCCCCCGCCA TGCGCAGCTC GACCCCGACA CCATTCTGAA CCGCTTCACC CTGCTGGCCG CGCGCCGCGC CGCGGGCGCC GCCATTGCCG CCACCGACGC GGTGATGGCG GGCGAGGTCG ACAACGCGTT CTGCTCGGTG CGCCCGCCCG GGCACCACGC CTGCTACGAA CAGGCCATGG GCTTCTGCTT CCTCAACAAC GTGGCCATTG CGGCGCGGCA TGCGCTCGAG GTGCACGGGC TGGAGCGCGT GGCCATCGTC GATTTCGACG TGCACCATGG CAACGGCACC GAGAACATCC TGTCGAACGA TCCGCGCGTG CTGATGGTGG GCTTCTTCCA GCATCCGTTC TATCCGTACA GCGGCACCGA GCACCCGGCC TCCAACATGC TCAACCTGCC GATCCCGGCC TACACCAGGG GCATGGACGT GCGCGAGCTG ATCGAGGCCG CCTGGATGCC CCGGCTCGAG GAATTCGCGC CCGAGATGAT CTTCGTGAGC GCGGGCTTCG ACGCCCACCG CGAGGACGAC CTGGGCCAGC TCGGCCTCAC CGAGAACGAC TTCGCCTGGA TCACCGGCCG CGTGCGGGAC GTCGCGCGGC GCCATGCGCA GGGCCGCATC GTCTCGATGC TCGAAGGGGG CTACAACCTG GACGCCCTCG CGCGCAGCGT CGAAGCCCAT ATCCGCGTCC TTGCCGATCT GTAG
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Protein sequence | MGKTGYFTHR DCWKHDMGRG HPECPERLDA IEDRLLLTGV GDALEHRDVP LATLAQITRA HSEAHLEHLE SLHQRLVADE PAGGPRHAQL DPDTILNRFT LLAARRAAGA AIAATDAVMA GEVDNAFCSV RPPGHHACYE QAMGFCFLNN VAIAARHALE VHGLERVAIV DFDVHHGNGT ENILSNDPRV LMVGFFQHPF YPYSGTEHPA SNMLNLPIPA YTRGMDVREL IEAAWMPRLE EFAPEMIFVS AGFDAHREDD LGQLGLTEND FAWITGRVRD VARRHAQGRI VSMLEGGYNL DALARSVEAH IRVLADL
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