| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3348 |
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| Symbol | |
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| ID | 7970586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3527600 |
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| End bp | 3528931 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644793933 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002945232 |
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| Protein GI | 239816322 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0975891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACGCA GAGACATCAT CAAGCGCACC GCGATCACCG TGTTCGGCGC CGGCCTGCCA
TTCAGTGGCG CGCTCGCGCA GAACCGCTAT GCAAAATACG CGGGCCAGAC AGTCACCCTC
AACGTGCCTT CGCATCCGCA CTACGACGCA ATGGCGAAGA TACTGCCCGA GTTCACGCGC
GAGACCGGCA TCAAGGTCGA GATCGACAAG CTCGCGATGG CGCGCCTCAA GGACAAGCAA
CTGCTCGAAA TGGCCAAGCC CCAGGGCGAC TACGACTTGG TGAGCTACGT CGTCATGTGG
AAGGGCGAGT ACGCAGCCAA GAACCTGGTA CGCCCGCTGG AGCCTTACCT GTCGGACGCG
GCGCTCGCCG ATCCGGCCTA CGACATCAAG GACATCATTC CGATCTACCT GGAGAACCTC
GGCCTCGTCG GCGGCCCCAA GGGCTATCTG CCCGGCGCAG GCGCCAAGCT CTATGGCCTG
CCGTACGGCG CCGAGACTTC GGTGCTGGCC TACCGCCGCG ACATCTTCGC CAAGCACAAC
CTGCAGCCGC CCGAGAACTA CGAGCAGTTC GGCAAGCTGC TGCGCCTGAT CAAGGACAAG
GAAGGCATGG GCGCGCTGGC CTCGCGCGGC CAGGCCGGCC ACCAGTGCGT GCATGCCTGG
CTGCTGCACC TGAACCCGAT GGGCGGCGCG ATCTTCGACG CCAGATGGGA GCCGCGCTTC
AACGATTCGG TAGGCGTGGC CGCGCTGAAG TTCCTGCAGG AAGTGGTCGC CACCGGCCCG
GCGGGCATCG CGGGCTATGG GCAGGGCGAG AGCAATACGG CCTTCCTGCA GGGGCAGGCC
TCGATGTACC TCGACTCGAC ACTGCTGGCC GGCTTGGTCA ACGACCCCGC CAAGAGCCGC
GTCGCAGGCA AAGTGAGCTG GGCGCTGCAT CCTGCGGGGA CGCGGCGTTC GTCGCAATCG
GGCGGGCTGG GCCTTGCGAT TCCGAAGAAC GCGAAGAACG CCGATGCCGG TTTCCTGCTG
ATGCAGTGGC TGACTTCGAA GGCGCAGGAC AAGGCGGTCG CGCGCGCGGG CGGCGTGCCG
ATCCGCAATT CGACGATGGC CGATGCCGAC CTGGTGCGCC AGTACCCCGA GTACATCGTC
TTTCGCGAAG CGCTGAAGTA TTCCAATCCC GACTGGCGCC CGATCATCGC GGCCTGGGAC
AAGATCAACG TGCAGGCGCT TGGCGTGGGC ATTTCCGAAG CACTGATCGG CAAGAAGACA
GCCGAGGCCG CGCTCAACGA GCTGGTGCCG ACGGTGAAGA AGATCATGCG CGAATCCGGC
TACGCGGTCT GA
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| Protein sequence | MQRRDIIKRT AITVFGAGLP FSGALAQNRY AKYAGQTVTL NVPSHPHYDA MAKILPEFTR
ETGIKVEIDK LAMARLKDKQ LLEMAKPQGD YDLVSYVVMW KGEYAAKNLV RPLEPYLSDA
ALADPAYDIK DIIPIYLENL GLVGGPKGYL PGAGAKLYGL PYGAETSVLA YRRDIFAKHN
LQPPENYEQF GKLLRLIKDK EGMGALASRG QAGHQCVHAW LLHLNPMGGA IFDARWEPRF
NDSVGVAALK FLQEVVATGP AGIAGYGQGE SNTAFLQGQA SMYLDSTLLA GLVNDPAKSR
VAGKVSWALH PAGTRRSSQS GGLGLAIPKN AKNADAGFLL MQWLTSKAQD KAVARAGGVP
IRNSTMADAD LVRQYPEYIV FREALKYSNP DWRPIIAAWD KINVQALGVG ISEALIGKKT
AEAALNELVP TVKKIMRESG YAV
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