| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3339 |
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| Symbol | |
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| ID | 7970577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3517752 |
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| End bp | 3518705 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793924 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
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| Protein accession | YP_002945223 |
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| Protein GI | 239816313 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.437446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCGCTG CCACCCCATC CCCGCACGTG CTGATGCCCG GCACCTACCC CGAATGGGAC
ATGGCACCCC TGCGGTCGCA GTACACGCTG CACCGCCTGT GGGAGGCACC CGACCGGCAG
GCCTTCATCG CCGAACATGC GCCGAACATC CGCGCGGTCG CCACGCGCGG CGAACTGGGC
GCGAACGCCG AGCTCATCGC CGCCCTGCCC GCTCTCGAAC TGATCGCCTG CTACGGCGTG
GGCACCGACG GCATCGACCT TGCGGCCTGC CGCGCCCGCG GCATCCGCGT GACCAACACG
CCCGACGTGC TCAACGGCGA CGTGGCCGAC CTCGCTGTCG GGCTCACGCT GGCATTGCAG
CGGCGCATTC CCGCGGGCGA TGCCTTCGTG CGCAGCGGCG CCTGGGCCAA CGGCGGCATG
CCGCTGACCA CGCGCGTCTT CGGCCAGCGC ATCGGCATCG CCGGTTTCGG CCGCATCGGC
AGCACCATCG CGCGGCGGCT TTCGGGCTTC GAGATGGAGC TGGGCTACTT CAGCCGCACG
GCGCGCGAGG ACAGCCCGCA TCGCCACTTC GGCAGCCTCG CGGCCATGGC CGAATGGTGC
GACGTGCTCA TCGTCATCCT GCCCGGCGGC GAGGCCACGC GGGGCATCGT CAACGCGGAA
GTGCTGCAGG CGCTGGGGCC CAATGGCTGG CTTGTGAACG TGTCGCGCGG CACCACGGTC
GACGAGGGCG CGCTGCTGCA GGCGCTCGAG CAGCGCAGCA TCGCAGGCGC GGCGCTCGAC
GTGTTCCAGA ACGAGCCGCG CATCGACCCG CGCTTTGCGG CGCTCGACAA TGTGGTGCTG
CATCCGCACC ATGGCAGCGG CACCGAGCAG ACCCGCCGCG CCATGGGCGA GCTGGTGCGC
CGCAACCTGC AGGCGCACTT CGGCGGCCTG CCTCTCATTA CCCCCGTGGC CTGA
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| Protein sequence | MTAATPSPHV LMPGTYPEWD MAPLRSQYTL HRLWEAPDRQ AFIAEHAPNI RAVATRGELG
ANAELIAALP ALELIACYGV GTDGIDLAAC RARGIRVTNT PDVLNGDVAD LAVGLTLALQ
RRIPAGDAFV RSGAWANGGM PLTTRVFGQR IGIAGFGRIG STIARRLSGF EMELGYFSRT
AREDSPHRHF GSLAAMAEWC DVLIVILPGG EATRGIVNAE VLQALGPNGW LVNVSRGTTV
DEGALLQALE QRSIAGAALD VFQNEPRIDP RFAALDNVVL HPHHGSGTEQ TRRAMGELVR
RNLQAHFGGL PLITPVA
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