| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3326 |
|---|
| Symbol | |
|---|
| ID | 7970564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3505786 |
|---|
| End bp | 3506796 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644793911 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_002945210 |
|---|
| Protein GI | 239816300 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA CCCTCACCCG GGCCCTTTGC CTCGGCATCG CACTGCTGCT GCCCGTGGCC
GCCGCCGTTG CGCAGGACAT CAAGGAGCGT TCGATCAAGT TCGCGTTCCA GAACCAGGGC
GACCATCCGC AGGCCCTGGG CGCGAAGAAG TTCGGCGAAC TCGTCGCGCA GAAGTCGGGC
AACAAGATGC AGGTCAAGCT GTTCCCGGGC GGCACGCTCG GCGGCGACGT GCAGACCGTG
TCGGCCCTCC AGGGCGGCAC CATCGAGATG ACCGTGCTCA ACGCCGGCAT CCTCTCCAAC
CAGGTCAAGG CCTTCGCGGT CTTCGACTTC CCGTTCCTGT TCGCCAATCC GCAGGAAGCC
GATGCGGTGA CCGACGGGCC TTTCGGCAAG AAGCTGTTCT CGGAACTCGC GGCCAAGAAC
CTCATCGGCC TGGGCTACTG GGACCTGGGT TTCCGCAACG TGACCAACAG CAAGCGCCCG
ATCAACAAGG TGGAAGACCT GGCGGGCCTG AAGATCCGCG TGATCCAGTC GCCGATCTAC
ATCGATCTCT TCAATGCGCT GGGCGCCAAT GCCACGCCGA TGCCCTTTCC TGAGCTCTAT
CCGGCGCTCG AGCAGAAGGC GGTCGACGGC CAGGAGAACC CGAACACGGT CATCCGCACG
TCGAAGTTCG CCGAAGTGCA GAAGCACCTC GCGCTCACGC AGCACGTCTA CAACCCGCAG
GCGCTGATCG TCGGCAAGAA GCTCTGGGAT TCCCTCAGCG ATACCGAGAA GAAAATCATG
ACCGAGGCGG CCGCAGAAGC CACCAGGTTC GAGCGCGAAA CGTCGCGCGG GCAGGCGCAA
GCCGCGCTGG AGGACCTGAA GAAGGCCGGC ATGCAGGTGA CCGAATTCAG CCCCGCCGAA
ATGCAGCGCC TGCGCGACAA GGTCAAGCCG GTGGTGGACA AGCACAGCGC CCTGGTGGGC
GAGGCCGTGG TCAAGGAGCT GTACGCCGAA ATCGCCAAGG TCCGCAAATA A
|
|---|
| Protein sequence | MKKTLTRALC LGIALLLPVA AAVAQDIKER SIKFAFQNQG DHPQALGAKK FGELVAQKSG
NKMQVKLFPG GTLGGDVQTV SALQGGTIEM TVLNAGILSN QVKAFAVFDF PFLFANPQEA
DAVTDGPFGK KLFSELAAKN LIGLGYWDLG FRNVTNSKRP INKVEDLAGL KIRVIQSPIY
IDLFNALGAN ATPMPFPELY PALEQKAVDG QENPNTVIRT SKFAEVQKHL ALTQHVYNPQ
ALIVGKKLWD SLSDTEKKIM TEAAAEATRF ERETSRGQAQ AALEDLKKAG MQVTEFSPAE
MQRLRDKVKP VVDKHSALVG EAVVKELYAE IAKVRK
|
|---|
| |