| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3308 |
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| Symbol | |
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| ID | 7973704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3486182 |
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| End bp | 3486931 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793893 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002945192 |
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| Protein GI | 239816282 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.616941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCTCA AGGACAAGAT CGTCGTCATT ACCGGCGGCG CCGGCGTCAA CGGCCTCGGG
TTCGCCACGG CGCGCCTGAT GGCGGCCCAT GGCGCCCGTG TCGCGGTGCT CGACCTGGAG
CGCGCCGCCC CTGCGGCGGC GGCCGCGCAA CTCGGCCCCG CGCATCTTGG AATCGTTGCC
GACGTGACCG ACAAGGCCTC GTGCGATGCC GCCGCCGCGA CTGTGCTGAA GGCATTCGGC
CGCATCGACA CGCTGGTCAA CAACGCAGGC ATCACACAGC CGGTCAAGAC GCTCGAGATC
AGCGGTGCGG ACTATGACCG CATCCTCGAC GTCAGCCTGC GGGGCACGCT GTACATGTCG
CAGGCGGTTC TGCCTTCCAT GCAGCAACAG GGCGGCGGAT CGATCGTCTG CATCTCGTCG
GTTTCCGCGC AGCGCGGCGG GGGCATCCTG GGCGGTCCGC ACTACTCGGC GGCCAAGGCC
GGCGTGCTTG GCCTGGCACG CGCCATGGCG CGGGAGTTCG GCCCCGAAGG CATCCGGATC
AACAGCATCA CGCCCGGCCT GATCGGCACC GACATCATCA AGGGCAGGCT CACCGAAGAG
AAAAAGGCCG AGATCGCCGA GACCATTCCG CTCGGCCGGC TGGGCCGCGC CAACGACATC
GCCGGCGCCT GCGTCTTCCT TGCCAGCGAT CTGTCGCTGT ACTGCACGGG GATCACGCTC
GACGTGAATG GCGGCATGTT GATCCATTGA
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| Protein sequence | MLLKDKIVVI TGGAGVNGLG FATARLMAAH GARVAVLDLE RAAPAAAAAQ LGPAHLGIVA
DVTDKASCDA AAATVLKAFG RIDTLVNNAG ITQPVKTLEI SGADYDRILD VSLRGTLYMS
QAVLPSMQQQ GGGSIVCISS VSAQRGGGIL GGPHYSAAKA GVLGLARAMA REFGPEGIRI
NSITPGLIGT DIIKGRLTEE KKAEIAETIP LGRLGRANDI AGACVFLASD LSLYCTGITL
DVNGGMLIH
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