| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3273 |
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| Symbol | mdoD |
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| ID | 7973669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3446845 |
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| End bp | 3448443 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793858 |
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| Product | glucan biosynthesis protein D |
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| Protein accession | YP_002945157 |
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| Protein GI | 239816247 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0778178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGATC GCCGATCCTT CCTTGCCGCA GGTGGTGCCG CCGCCGCACT CGCCGCCCTT
GGACTGCCCG AAGAGGCACT GGCCGCCAAC GGCCTGAAGC TGAGCCAGCC TTCGCCCTTC
TCGTTCGACC GCCTGGTGGC GCAGGCCAAG CGCCTGGCCG GGCAACCCTA TGCCGCCGCC
ACGCCGCTCG CGCCCGAGGT GCTCGAGAAG ATCGACTACG ACGCGCACGG CAAGATCAAG
TTCGACCCGG CCAACGCCCT CTTCCGCGAC GGCCCGGGCG CCTTTCCCGT CACCTTCTTC
CACCTCGGCC GTTTCTTCCA GACGCCGGTG CGCATGCACG TGCTCGAGAA CTCCGATGGC
GATGCCTTCG CGCGCGAGGT GCTCTACAGC CCTTCGTACT TCTCGATGCC GCCCGACAGC
CCGGCGCGCG CGCTGCCGGC CGGCGCGGGC TTTGCGGGCT TTCGGCTGCA GGAAAGCCGC
CTGGGCGACC AGGGCAAGCT CGACTGGCAG AAGAACGACT GGGTGGCTTT TCTGGGCGCC
TCCTACTTCC GCGCGATCGG CGAGCTCTAC CAGTACGGCC TGTCGGCGCG CGGCCTGGCG
CTCGACGTGG CGGTGCCCGA CAAGCCCGAG GAATTCCCCA CTTTCACGCG CTTCTATTTC
GAGACGCCGG CCGCCAACAA CACCACCTCG ATGACCGTCT ACGCGCTGCT CGAAGGGCCG
AGCGTCACGG GCGTGTTCAA GTTCGTGATG CAGCGCGGCA AGGCCGTGAT CATGGACATC
GACGCGCGCG TTTTCCTGCG CCGCGACGTC TCGCGCCTTG GCCTGGTGCC GCTCACCTCG
ATGTACTGGT ATTCGGAAAC CATCAAGCCC ACCGCCATCG ACTGGCGCCC CGAGGTACAC
GACTCCGACG GCCTGGCCAT CTGGAACGGC GCGGGCGAGC GCATCTGGCG CCCGCTCAAC
AACCCGACGC AGACGCGCGC CTCGGCCTTT GCCGACACGC GGCCGCGCGG CTTCGGGCTG
CTGCAGCGCG ACCGCGCGTT CGACAACTAC CAGGACGGCG TCAACTACGA GAAGCGCCCG
AGCCTGTGGA TCGAACCGCT GGGCGACTGG GGCGAAGGCT CGGTGCAGCT GATCGAGATC
CCGACCGACG ACGAGATCCA CGACAACATC GTCGCCTTCT GGGTGCCCAA GGCCGACGCC
AAGGCGGGCG CGAGCTACAG CCTGCAGTAC CGGCTGCACT GGACCGACCA GGAGCCCTTT
CCCTCGCCGC TCGCGCGCTG CGTGGCCACG CGCATCGGGC GCGGCGGACA GCCGGGCCAG
CCGCGCCCGC CGGGCGTGCG CAAGTTCATG GTGGAGTTCG TCGGGCAGCC GCTCACCACC
GTGCCCTTCG GCGTGAAGCC CGAGCTGGTG CTGACGGCGC CGCGCGGCAA GTTCTCCTAC
GTCTTTGCCG AGGCCGTGCC CAACGGCGTG CCGGGCCACT GGCGCGCCCA GTTCGACTTC
ACGCCCGAAG GCAACGAGCC GATCGACATG CGGCTCTACC TGAAGACCGG GGACAAGACG
CTCACCGAAA CCTGGCTGTT CCAGTTCCAG CCAGGTTGA
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| Protein sequence | MLDRRSFLAA GGAAAALAAL GLPEEALAAN GLKLSQPSPF SFDRLVAQAK RLAGQPYAAA
TPLAPEVLEK IDYDAHGKIK FDPANALFRD GPGAFPVTFF HLGRFFQTPV RMHVLENSDG
DAFAREVLYS PSYFSMPPDS PARALPAGAG FAGFRLQESR LGDQGKLDWQ KNDWVAFLGA
SYFRAIGELY QYGLSARGLA LDVAVPDKPE EFPTFTRFYF ETPAANNTTS MTVYALLEGP
SVTGVFKFVM QRGKAVIMDI DARVFLRRDV SRLGLVPLTS MYWYSETIKP TAIDWRPEVH
DSDGLAIWNG AGERIWRPLN NPTQTRASAF ADTRPRGFGL LQRDRAFDNY QDGVNYEKRP
SLWIEPLGDW GEGSVQLIEI PTDDEIHDNI VAFWVPKADA KAGASYSLQY RLHWTDQEPF
PSPLARCVAT RIGRGGQPGQ PRPPGVRKFM VEFVGQPLTT VPFGVKPELV LTAPRGKFSY
VFAEAVPNGV PGHWRAQFDF TPEGNEPIDM RLYLKTGDKT LTETWLFQFQ PG
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