Gene Vapar_3234 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3234 
Symbol 
ID7973467 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp3411854 
End bp3412495 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content69% 
IMG OID644793819 
ProductCDP-alcohol phosphatidyltransferase 
Protein accessionYP_002945118 
Protein GI239816208 
COG category[I] Lipid transport and metabolism 
COG ID[COG1183] Phosphatidylserine synthase 
TIGRFAM ID[TIGR00473] CDP-diacylglycerol--serine O-phosphatidyltransferase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACCA CCCCCTCCCC CGTACCGGTC CGCAAGCATT TCTCGATGAT CCGCGGCTTT 
CACCTGGCCG ATGCATTCAC GCTCGGCAAC GCGGCATGCG GGGTGGGCGC GGTGTTCCTT 
TCGATGGCCT TCATGGCGAG CCAGTCGCTC GCGCAATTCC TCTGGGCCGC CGCGCTCGCG 
CCGGCGGCCT TCGTGTTCGA CGTGTTCGAC GGGCGCATCG CGCGCTGGCG GCAAACGCAT 
TCGGCGCTGG GGCGCGAACT CGATTCGCTG GCCGACGTGA TCTCCTTTGG CGTGGCGCCG 
GCCGCGCTCG GCTTTGCCGC GGGCCTGGAC GGCGGCTGGG ATTGCGTGCT GCTGATCTAT 
TTCGTGTGCT GCGGCGTGAG CCGGCTCGCG CGCTACAACG TCACGGCCGA GGCGCTGTCC 
GCGGGCGCCG ACAAGGTCAA GTACTTCGAA GGCACGCCCA TCCCGACTAG CGTGGTGCTG 
GTGGGCGTGC TGGCCTGGGC CGCCTGGCAG GGGCGCATCG GCGACGGGGT GTGGGGCGGC 
GCCTGGATGC TCGGCCCCTG GCAGCTGCAT CCGCTCGCGC TGCTCTTCGC GCTCTCGGGC 
ACGCTGATGA TCAGCAAGAC GCTGCGCATT CCCAAGTTTT GA
 
Protein sequence
MATTPSPVPV RKHFSMIRGF HLADAFTLGN AACGVGAVFL SMAFMASQSL AQFLWAAALA 
PAAFVFDVFD GRIARWRQTH SALGRELDSL ADVISFGVAP AALGFAAGLD GGWDCVLLIY 
FVCCGVSRLA RYNVTAEALS AGADKVKYFE GTPIPTSVVL VGVLAWAAWQ GRIGDGVWGG 
AWMLGPWQLH PLALLFALSG TLMISKTLRI PKF