| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3190 |
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| Symbol | |
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| ID | 7973423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3363152 |
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| End bp | 3365446 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793775 |
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| Product | exopolysaccharide transport protein family |
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| Protein accession | YP_002945074 |
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| Protein GI | 239816164 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG0489] ATPases involved in chromosome partitioning |
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| TIGRFAM ID | [TIGR01005] exopolysaccharide transport protein family
[TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.732974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCGC ACTGGCAACC TGCACTCCCC GCTCCCTCGG TCCCCGATGC CGCGGCATCC
GACAACCCTC CTTCCAGGCT CAGGGAGCAT GTCGACCTGC TGCTGGACAA CCGGTGGAGG
ATCGCGGGCA TCACCGCTGT CGCGCTGCTG CTGGGCGCGG CCTACGCCAT GTTCGGGCCG
CGCGTGTACG AGGCCAACGT GCTGATCCAG GTCGAGGACC CGGACCGCTC GGGCGGCACG
CTGGTCGGCG ACTCCGCGAG CAACGCGCTC AATGCCAAGA CGCCGACCGC GGGCGAGGCC
GAGATCCTCA AGTCGCGCCT GGTGCTCGAG CAGGCGATCG AGAACACCAA GCTCTACATC
GAGGCGCAGC CGCTGTACGT GCCGATCGTC GGCGCCTGGT TGGCGCGCCA CGCCAAGGCG
CTCTCCGAGC CGGGCTTCGC AGGCCTGTCG GGCTACGTGA GCGGCAAGGA GCAGATCGTG
GTCGCGCAGA TGGACGTGCC GGTGGATCTC GAAGGCAAGC GCTTCCTGCT GACCGCGGGC
GCGAACGGCA GCTACACACT GACCCACCCC AAGCTGGACA AGCCGATCGC CGGCACCGTC
GGCGTGCCGC TCGACGCGCA GACCCCGCTC GGCCCGATCC ACCTGCTGGT CGGCTCGATC
TCGGGCCTGC CCGGCGCGGC CTTCGAGCTG GTGCGCCAGT CCAAGCAGCT GGTGCTGCTC
GACCTGCAGC GCGAGCTGCG CGTGATCGAG AAGGGCAAGC AGTCGTCGGT CGTGGAAGTG
AGCTGGCGCG ACGGCAACCG GACGCAGCTG GCGAACCTGC TCAATGAGGT CGCGCAGCTC
TACGTGCGCG TGAACATCGA CCAGAAGACG GCCCAGGCGC AGCGCGCCCT CAACTTCCTG
GGCACCGAGC TGCCCAAGCT CAAGCTGCAG CTGGAGCAGT CCGAGGAAAT CTACAACCAG
TACCGCAACC AGAACGGAAC CATCAGCCTG GACGACGAGG CGCGCAACGC GCTGTCGCAG
AACCTGGAGC TGCAGACGAA GCTGTTCGAT GCCACGCAAA AGCGCATCGA GCTCTCCGAG
CGCTTCACAT CCAGGGACCC GAGCGTGATG ACTGTCGACG CGCAGATCGC CTCGCTCAAG
AAGGCGATGG GCACCGTGGA GCAGCGCATC CGCCGCATGC CCATGCTGCA GCAGAACTCG
CTGCGCATGC AGCGGGACAT CAAGGTCAAC ACCGACCTGT ACGTGTCGCT GCTCAACAGC
TCGCTGCAGA TGCGCCTGGC CAAGGAAGGC CGCATCGGCA ACGTGCGCGT GCTCGACCAG
GCGCTGCTCC CGGAAAAGCC GATCCGGCCC AAGCCCTCGA TCGTCATGGG CATCGCGCTG
ATCGCGGGCC TTTCGTTCGG GGCGGGCTCG GCGTTCCTGC GCAGGTCGTG GCGCAAGACC
ATCGCCAGCC CGGCCGAGAT CGAGACCCAC ACGGGCCTGG ACGTCTACAG CACCGTGACG
CTCAGCACGA ACCAGCCCCT GCTCGACCGC GCCATTCGCC ACGCCAAGCC CGGCGTGCAC
CTGCTGGCGG CGCAGCATCC GAACGACCCG GCGCTGGAGG GGCTGCGGCG GCTGCGCACC
GCGCTGAAGT TCGCCATGCC CAAGGCGTCG AACAACCGCG TCATGATCTC CAGCGCCACG
CCGGGCGCCG GCAAGACCTT CGTGGCGGGC AACCTGGCGG CCGTGCTCGC CTCGACCGGC
CGCCGCGTGC TGCTGATCGA CGCCGACCTG CGGCGCAGCA GCCTGGCAAG CATGTTCGGG
CTGAAGCGCC GCGGCGGCCT GTCGGAACTG ATCCGCGGCT CGATCGAATT CCAGAACGCC
GTCCACACGG GCGTGCTCGG GCACCTGGAC GTGATGACCA CCGGGGCGCT GCCCTCGGAC
CCGAGCGCGC TCCTGACGAG CGACGCCTTT GCCGAGGTTC TCGAAAAAGC CTCGGAACAC
TACGACGTGG TGATCGTGGA CACGCCGCCG ATGCTGCTGG CTTCCGAGAC CGCCGAGCTG
GCGCCCTGGA TGGGCACGCT GCTGATGGTG GCGCGCGCCG GGGACAACGA ACTGGGCGAC
CTGTCGGAAA GCGCGAACCA GCTGCGGCAT TCCGGCTCGC AGTTCCAGGG CGTGGTGCTG
AACGCGATGG ACACCAGCCG CCGCTACTAC GGCAAGCTGG CCTACCGCTA CGGCGGCTAC
CAGCCGCGGG TGCACGAGTA CCCGAGCGCG GTGGCCGAGC TTCCCCAACC TGCCCGTGCG
AGCGCCGCAT CATGA
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| Protein sequence | MNAHWQPALP APSVPDAAAS DNPPSRLREH VDLLLDNRWR IAGITAVALL LGAAYAMFGP
RVYEANVLIQ VEDPDRSGGT LVGDSASNAL NAKTPTAGEA EILKSRLVLE QAIENTKLYI
EAQPLYVPIV GAWLARHAKA LSEPGFAGLS GYVSGKEQIV VAQMDVPVDL EGKRFLLTAG
ANGSYTLTHP KLDKPIAGTV GVPLDAQTPL GPIHLLVGSI SGLPGAAFEL VRQSKQLVLL
DLQRELRVIE KGKQSSVVEV SWRDGNRTQL ANLLNEVAQL YVRVNIDQKT AQAQRALNFL
GTELPKLKLQ LEQSEEIYNQ YRNQNGTISL DDEARNALSQ NLELQTKLFD ATQKRIELSE
RFTSRDPSVM TVDAQIASLK KAMGTVEQRI RRMPMLQQNS LRMQRDIKVN TDLYVSLLNS
SLQMRLAKEG RIGNVRVLDQ ALLPEKPIRP KPSIVMGIAL IAGLSFGAGS AFLRRSWRKT
IASPAEIETH TGLDVYSTVT LSTNQPLLDR AIRHAKPGVH LLAAQHPNDP ALEGLRRLRT
ALKFAMPKAS NNRVMISSAT PGAGKTFVAG NLAAVLASTG RRVLLIDADL RRSSLASMFG
LKRRGGLSEL IRGSIEFQNA VHTGVLGHLD VMTTGALPSD PSALLTSDAF AEVLEKASEH
YDVVIVDTPP MLLASETAEL APWMGTLLMV ARAGDNELGD LSESANQLRH SGSQFQGVVL
NAMDTSRRYY GKLAYRYGGY QPRVHEYPSA VAELPQPARA SAAS
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