| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3184 |
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| Symbol | |
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| ID | 7973417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3347015 |
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| End bp | 3354379 |
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| Gene Length | 7365 bp |
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| Protein Length | 2454 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793769 |
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| Product | amino acid adenylation domain protein |
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| Protein accession | YP_002945068 |
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| Protein GI | 239816158 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3321] Polyketide synthase modules and related proteins |
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| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATTC AAATAGCCGA TCCGGCGCCA TCCGCGCCCC CCCGACTTTC ATTGGATGAT
CTGTTCGTTT CGCGCCTCAA TTCGGACAGG CCGGACGAAC GGATCCAGGA CTCGGTGGCG
CTCGGGGAGC AGGGCACGCT GCGCTGGACG CAATGGCTCG ACGCCACCGG CCAGCTGCCC
GACGCCCCCT TTGCGGCGGC GTGGCTCCTG CTCCAGGCGC GCTGGCTCGG CGAACAGCAG
CCGGATCCGT CCGAATCGGC CCGCACCTGG CTGGCCTCGC TCGACCAGGA ACGGCGCCAG
GCGGCTACCG CGGGCTCGGC AGGCTCGCCG GAGCCATCGC CGAAAGTTCT CTGGCTGGGC
TGCGACCCCG GCGTCGACGG CGTCCAGGCC CCTCTCCTCC TCTGGCTGAG CACCACCGCA
TCGGATACGC CGCGCCTTCA CGCCAGCGCG GCAGCAAGCC TGCTGGACGC GGCATCGGTG
CAGCAGCTGC TGGCAGCCAT TGTCGACACC GCCGCCGATC TGCTCGAGCG GCCCGAATGC
CCGCTCCGCG AGATCCGCAC CCTGCCCGCC GCCGACCGCG CGCGCCAGCT CGCCGACTGG
AACACGCCCC CCGCTCCCCT TGACCCGAGC CTCACCGTGG TGGGCCTGTT CGCGCGCCAG
GCCGCGGCCG CGCCCGATGC CATGGCGCTC GCGCAAGGCG ATGCGCAGAT GAGCTACGGC
GAACTGGAGC GCCAGTCCGG CCAGCTCGCG CAGCGCCTGC AGCACCTGGG CGTGCGTGCG
GGCGACAACG TGGGGCTGGT GCTCGACAGG TCGATCGAGG CCGTGGTGGC GCAGCTGGGC
GTGCTCAAGG CCGGCGCGGC CTATGTGCCG GTGCCGACGG ATTTCCCGCC CGAGCGCATC
GCCTTCATGC TCGAGCAGGC GAACGCGCAG CAGGTGGTCA GCACCTCGGC GCTGCGCCAC
CTGGTGCCCG CCTCCCGTGC GCTGCTGCTG CTCGACGAAG CCGAGGACAC CGAACCCGCG
CCCTGGAGCG CTCCCGCCAT CGACGGCGAA TCGGTGGCCT ACGTGATGTA CACCTCGGGC
TCCACGGGCA CGCCCAAGGG CATCGAGATC TGCCACCGCG CGATCCTGCG GCTGGTCGTC
GGCATCGACT ATGCGCAGCT GGCGCCGGGC CGCAGCGTGC TGCACGCCGC GCCGCTGGGC
TTCGATGCCG CCACCTTCGA GATCTGGGGC CCGCTGCTCA ACGGCGGCTG CTGCGTGGTG
CATGGCGAGC GCGTGCCCAC GGGCGCGGGC CTGGCCGGCA CCATTGCGCG CCACCAGGTG
CACACCGCCT GGCTCACGGC GGCGCTGTTC AACGCGGTGA TCGACGACGA CCCGGCGCAT
CTTTCGGGCC TGCGGCATCT CATCACCGGC GGCGAAGCGC TGTCGGTGCC GCACGTGCGG
CGCGCGCTGG CCGCGCTGCC GGCGCTTGCG CTCAGCAACG GCTACGGGCC GACCGAATGC
ACCACCTTCG CGGCCACCCA CCGCATTCCG GCGGCGCTGC CCGCCGACCT GCGCTCAGTG
CCGCTCGGCC GGCCGATCAA GGACACCGTG CTGCGCGTGC TGAGCCCTTC GATGGACCTG
CTGCCTAGCG GCCTGGTGGG CGAGCTGTGC ATCGGTGGCC ATGGGCTCGC GCGCGGCTAC
CTGCGGCAGC CGCAATTGAC CGAAGAGCGC TTCGTGCCCG ATCCGTTCGG CGCGCCGGGC
GATCGCCTCT ACCGCACCGG CGACCTGGCG CGCTGGCTGC CCGACGGCAC CATCGAATTC
ATCGGCCGGC GCGACGGCCA GGTCAAGATC CACGGCCACC GCATCGAGAC CGGCGAGGTC
GAGGCGGCCA TCCTCTCGCA CCTCGCGATC CAGGCCTGCG CCGTCGATGC GCGGCCCGAC
GCCGATGGGC AGCTGCGCCT GGTGGCCTAC CTCGTCGCAC GCTCGCACAA GCTCTCGTGG
GATGCGCTGC GCACGCACCT GGCCGCGCGC CTGCCCGCGG CGCTGCTGCC CTCCGCGCAG
GTCTGGCTCG CGCAGCTGCC GGTCACGCCC AACGGCAAGC TCGACCGCCG TGCGCTGCCC
GAACCGGCGG CCGAGCGGCC CGATCTGGCG CAGCCCTTCG AGGAAGCGCG CAGCGCCGCC
GAGCAGCGCG TGTGCGAAGC CTTCGCCCGC GCGCTGCACA TCGAGAAGGT CGGGCGCAAC
GACAACTTCT TCGACCTGGG CGGCGATTCG CTGCGCGTGC TGCAGGTGCT GGCCGAACTG
CAGCAGGACA GCGCGCAGCC GCTGTCGACC AACCTGTTCT TCCGCCATCC GACGCCGAGC
GCCATCGCGG CCGAGCTGGA GACGGCCGCC GCCGGCGATG CGGCGCCCGC AGCCGCCGCC
GCGCCGCGCA CAGTGCACGA GCAACAGCAA CAGCAGCCCG CCGAGCCCGA CGCCCACATG
TCGGATGCGA TTGCGCTGAT CGCCACCGCG GGGCGCTTTC CGGGTGCGGC CGATGTCGAG
CAGTTCTGGG AGAACCTCGT TGCCGGCCGC GACACCATCA GCTTCTTCGA CGACGACACG
CTCGATGCCG GCGTGAGCGA CGCGCTGCGC AAGGACCCGG CCTACGTGCG GGCCCGCGGC
GTGATCGAGG GCATCGAGAA CTTCGACGCC GCCTTCTTCG GCATCGGCCC GAAGGACGCC
GCGCTGATGG ACCCGCAGCA GCGCGTGTTC CTGGAGATCT GCTGGGAATG CCTGGAGCGC
GCGGGCTACG TGCCCGATGC CGCGCCGGGC CCGGTCGGCG TGTATGCCGG CATGTACAAC
GCCAGCTACT TCCAGCGCCA CGTCGCCACG CGGCCCGACC TCATCGAAGC GGTGGGCGAG
TTCCAGGTGA TGCTGGCCAA CGAGAAGGAC TACATCACCA CGCGCGTGGC CAACCGGCTC
AACCTGACGG GGCCGGCGGT GAGCATCCAT ACCGCCTGCT CGACCTCGCT GGTGGCGGTG
GCCCATGCCT TCCACGCACT GCGCACCGGC CAGTGCTACA TGGCGCTGGC CGGCGGGGCC
TCCGTCACCT GCCCGCCGCG CAGCGGCTAC CTGTACCAGG AAGGCTCGAT GCTCTCGCCC
GACGGGCACA CGCGCAGCTT CGACGCGCAG GCCCAGGGCA CGGTCTTCAG CGACGGCGCC
GCGGTGGTGC TGCTCAAGCG CCTGGCCGAC GCGCAGGCCG ACGGCGACAC CATCTATGCG
GTGCTGCGCA GCGCCTGCGT CAACAACGAC GGCGGCACCA AGGCCAGCTT CACCGCGCCC
AGCGTGGACG GGCAGGCCGC CGTGATCCGC GCGGCGCTGG CGGCAGCCAA CGTGGACGCG
CGCAGCATCT CCTACGTGGA GGCGCACGGC ACCGCCACGC CGATGGGCGA CCCGGTCGAG
GTCGAGGCAC TGACCTGCGC CTATGCCGAG CACACCGGCG CGCTGGGCTA CTGCACGCTC
GGCTCGCTCA AGAGCAACGT GGGCCACATG GTGACGGCCG CGGGGGCCGC CGGCCTCATC
AAGGCCGCGC TCTCGCTGCA CCACGAGGCG ATTCCGCCGA CCGCGCACTT CAGCGCACCC
AACCCGGCGA TCGACTTCGC GCGCACGCCC TTCTACGTGA GCGGCAGCCT GCAAGCCTGG
CCGCGCACCG GCCAGCCGCG GCGCGCCGGC GTCAGCGCCT TCGGCGTGGG CGGCACCAAC
GCGCACATCA TCCTCGAGGA AGCGCCCGCG CGGCCTGCCA CGGCCAGCGC CGCGGGGCCG
CAGGTGCTGC CGATCTCGGC CCGCTCGGAG GCCGCGCTGG CGGTGGCCAC GGAACAGCTG
GCCGCACACC TCGACGCGAC GCCCGGCGTG CCGCTGGCCG ATGTGGCGTA CACGCTGAGC
GTCGGCCGCA AGGCGCATGC CTTCCGCCGC GCGGTGGTGG CCGGCGATGC GGCGCAGGCC
GTGGCCGCGC TGCGCGCGGG CGACAGCCCG TGGCGCGCCA GCGGCCGCGT CGATGCGCGC
GCGCCGCAGC CGGTGCTGAT GTTCCCGGGC CAGGGCGCGC AGTACACCGG CATGGGCAAG
ATCCTGCACG CCAACGATCC GGTGTTCGCA GCCGCCTTCG ACACCTGCCT GAAGGCCTTC
GGCAGCGCGG TGGACTTCGA CCTGCGCGAG CGCATGTTCG GCGACGATCC GCAGGCGCTG
CTGCCCACCG CCGTCACGCA GCCCGCGATC TTCGCCATCG AGTACGCGCT GGCGCGCCGG
CTGCTCTCGC TGGGCGTGCG GCCGCATGCG CTGATCGGCC ACAGCGTGGG CGAGTTCGTG
GCCGCGGTGA TCGCCGGCGT GATGCGGCTG GAAGACGCGG CCCGGCTGGT GGCCCGCCGC
GGCGCGCTCA TGCAGGCGCA GCCCGCGGGC GCGATGCTGT CGGTGCGCCT GGGCGCGGCC
GAACTCTCGG CCCGGCTCGG GCCGCTGCTC TCGCTGGCCG CGGACAACGG ACCCACGGCC
TGCGTGGTGG CCGGCCCGTT CGACGCGATC GAAACGCTGC GCGCCTCGCT GCAGGAAGAA
GACATCGCGA GCCGCCAGCT GCAGACCTCG CACGCCTTCC ATTCCTCGAT GATGGATGGC
GCCGTCGCGC CCTTCGAGGC ACTGGTCGGC GAAGTGGCGC TGCATGCGCC CACGGTGCCG
ATCTTCTCGA CGCTCACGGG CCGCCTGCTC GAAGAGGCCG AGGCCACCAG CCCCGCCTAC
TGGGCCCGCC ACCTGCGCAG CACCGTGCAG TTCTCGCCCG CCGTGCGCAG CGCCATGGCG
CAGGCGGTGC GCCCGCTCTT CATCGAGGTG GGGCCCCGCA ACACGCTGGC CACGCTGGTG
CGCCAGCACG GCGCGGCCGA AGTGATGCCG CTGCTGCACG GCGAGCCCGC CGACGAGGCC
CGCACGCTGC GCCTGGCGCT GGCCCGCCTC TGGACCTGCG GCGCGGACGT GGAGCTGTCG
CGCCTTTCCG TTCGCACCGG CGCACAGCGC GTGCGCCTGC CCACCTACCC CTTCGAACGC
AAGCGTTTCT GGGTCGACAT CGCAGCGGCC GCGGCGAGCC CGGCCATCCC CTCGCCGGTT
TTGCCGCCGG CCCAGCTGCC CGTTGCCCCA TCCACGCCCG CGCTCTCCGT TCCACCCACC
TTCTTGGAGC CGACCGTGAC AGCTGCAGTG CCCCCGCCAC TTCCCTCTTC TCCCGCGTCC
CCCGCCCTTG CTGCGCCCAC CGAATCCATG GACACGCGGC TGCGCTCCCT GTTCGAGGAC
ATCTCCGGCA TCGACATGAT GCAGGCCGAG GGACATGCCG CCTTCGGCGA GCTGGGCCTG
GATTCGCTCA CGCTGACGCA GGTCGCCACG CAGATCAAGA AGCGCTTCAA GGTGAACCTG
AGCTTTCGCC AGCTGATGGA GAACTACCGC AGCTTCGACA CCCTGTCCGC CTTCCTGCGC
GAGAGCCTGC CGCCCGAGCC CGTGGTTGCG GCTGTATCCG CACCTGCATC CGCTGCTGCG
GTGCCGCTGG CGATGGCCGC GCCGGTGCAG GCAGCGGCCG CGCAGCCGCC GGCCGCGTTC
CTCCCCGGGG TGACCGTGCC GGCCGCGGGC GGCGACATCG GCAGCGGGCC GATCGTCCAG
CTGGTGGCGC AGCAGATGGA ACTGATGCGG CGCCAGCTCG CGCTGCTGTC GGGCGCGGCC
ATCGAGACGC TGCCCGTTGC GTCCGCCATG CCGGCTGCCG CCGCAAGCAC CGCGGCCGTG
GCGGCGCAGC CCGCCGCCGA CGAACCCGCC CCGGCCAGGG AGCCGCAGCG CTACGACGTC
ACCAAGGCCT TCGGCGCGAT CGCGCGCATC CACACCCAAC GCACCGCCGA GCCGAGCGGC
CGGCAGAAGG CGCGGCTGGC GGCCTTCATG CGGCGCTATG TGGAACGCAC GCAAAAGAGC
AAGCAGTTCA CCCAGGCCAA CCGCCCGCAC ATGGCCGACC CGCGCGTGGT CAACGGCTTC
CGGCCGCTGA CCAAGGAGAT CACCTACCAG ATCGTGATCG AGCGCTCCAA GGGCTCCAGG
CTCTGGGACC TGGACGGCAA CGAATACGTC GATGCGCTCA ACGGCTTCGG CATGAACATG
TTCGGCTGGC AGCCCGATTT CGTGCAGGAA GCGGTGCGCA AGCAGCTCGA CGCGGGCTAC
GAGATCGGCC CGCAGCATCC GCTGGCGGCC GAGGTCACCG CCCTCATCTG CGAGCTCACG
GGCTGCGATC GCGCCGCCCT GTGCAACACC GGCTCCGAAG CCGTGATGGC CGCGCTGCGC
ATTGCGCGCA CGGTCACCGG GCGCAGCACC GTGGTGGTGT TCACCGGCTC CTACCACGGC
ACCTTCGACG AGGTGCTGGT GCGCGCCGGC AAGGGCGGCA AGGGCTTGTC TGCGGCTCCG
GGCGTGATGA GCGGCATGTT CGGCGACATC CGCGTGCTGG ACTACGGCAC GGCGGAGGCG
CTGGCCTTCA TCCGCGAGAA CGCGGACGAC CTGGCCGCGG TGCTGGCCGA GCCGGTGCAA
AGCCGCCGGC CCGACTTCCA GCCGCGCGAG TTCCTGCAGG AGGTGCGCAC CATCACCGAG
AAGAGCGGCA CCTGCTTCAT CTTCGACGAG GTCATCACGG GCTTTCGCGT CGGCCTGGGC
GGCGCGCAGG AACTGTTCGG CGTGCGCGCC GACCTCGCCA CCTACGGCAA GGTGATCGGC
GGCGGTTTTC CGGTGGGCGT GATCGCCGGC AAGCGGGCCT TCATGGACGC GCTCGACGGC
GGCGCCTGGC AGTACGGCGA CGACTCGATC CCGGGCGTGG GCGTGACCTA CTTTGCCGGC
ACCTTCGTGC GGCACCCGCT CGCGCTGGCC GCGGCCAAGG CCTCGCTCAC GCACCTGAAG
GAAGCCGGCC CCTCGCTGCA GGCCGGCCTC ACGGGCAGCA CCGCCGCCAT GGCCGACGAG
CTCACGGCCT GGTGCGCCGA GGTGGGCGCG CCGATCGCGA TCCGCCAGTT CGCCTCGCTC
TGGCGCGTGA GCTGGCTCGA GGAGCATCCG CTGCAGGACC TGCTGTTCGC CATGATGCGC
AGCCGCGGCG TGCACATCCT GGACAACTTC CCCTGCTTCC TCACTAGCGC GCACAGCGCC
GAGGACATCG CCACCATCCA GCGCGTCTTC AAGGAGTCGG TGGCCGAGAT GCAGGAATCG
GGCTTCCTGC CGCGCCGCGC GACGGTGATC ACGGGTTTCG ACTACCGCAA GCGCTGCGAA
GAAGACGGCT CCGTCCTCGC CCGCGACGTC GACGGCCAGC CCTTCTGGTA CGTGCCCGAC
GCCGCGAGCC CCACCTCCCT CATCAATGGA AAGGCCGCAG CATGA
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| Protein sequence | MKIQIADPAP SAPPRLSLDD LFVSRLNSDR PDERIQDSVA LGEQGTLRWT QWLDATGQLP
DAPFAAAWLL LQARWLGEQQ PDPSESARTW LASLDQERRQ AATAGSAGSP EPSPKVLWLG
CDPGVDGVQA PLLLWLSTTA SDTPRLHASA AASLLDAASV QQLLAAIVDT AADLLERPEC
PLREIRTLPA ADRARQLADW NTPPAPLDPS LTVVGLFARQ AAAAPDAMAL AQGDAQMSYG
ELERQSGQLA QRLQHLGVRA GDNVGLVLDR SIEAVVAQLG VLKAGAAYVP VPTDFPPERI
AFMLEQANAQ QVVSTSALRH LVPASRALLL LDEAEDTEPA PWSAPAIDGE SVAYVMYTSG
STGTPKGIEI CHRAILRLVV GIDYAQLAPG RSVLHAAPLG FDAATFEIWG PLLNGGCCVV
HGERVPTGAG LAGTIARHQV HTAWLTAALF NAVIDDDPAH LSGLRHLITG GEALSVPHVR
RALAALPALA LSNGYGPTEC TTFAATHRIP AALPADLRSV PLGRPIKDTV LRVLSPSMDL
LPSGLVGELC IGGHGLARGY LRQPQLTEER FVPDPFGAPG DRLYRTGDLA RWLPDGTIEF
IGRRDGQVKI HGHRIETGEV EAAILSHLAI QACAVDARPD ADGQLRLVAY LVARSHKLSW
DALRTHLAAR LPAALLPSAQ VWLAQLPVTP NGKLDRRALP EPAAERPDLA QPFEEARSAA
EQRVCEAFAR ALHIEKVGRN DNFFDLGGDS LRVLQVLAEL QQDSAQPLST NLFFRHPTPS
AIAAELETAA AGDAAPAAAA APRTVHEQQQ QQPAEPDAHM SDAIALIATA GRFPGAADVE
QFWENLVAGR DTISFFDDDT LDAGVSDALR KDPAYVRARG VIEGIENFDA AFFGIGPKDA
ALMDPQQRVF LEICWECLER AGYVPDAAPG PVGVYAGMYN ASYFQRHVAT RPDLIEAVGE
FQVMLANEKD YITTRVANRL NLTGPAVSIH TACSTSLVAV AHAFHALRTG QCYMALAGGA
SVTCPPRSGY LYQEGSMLSP DGHTRSFDAQ AQGTVFSDGA AVVLLKRLAD AQADGDTIYA
VLRSACVNND GGTKASFTAP SVDGQAAVIR AALAAANVDA RSISYVEAHG TATPMGDPVE
VEALTCAYAE HTGALGYCTL GSLKSNVGHM VTAAGAAGLI KAALSLHHEA IPPTAHFSAP
NPAIDFARTP FYVSGSLQAW PRTGQPRRAG VSAFGVGGTN AHIILEEAPA RPATASAAGP
QVLPISARSE AALAVATEQL AAHLDATPGV PLADVAYTLS VGRKAHAFRR AVVAGDAAQA
VAALRAGDSP WRASGRVDAR APQPVLMFPG QGAQYTGMGK ILHANDPVFA AAFDTCLKAF
GSAVDFDLRE RMFGDDPQAL LPTAVTQPAI FAIEYALARR LLSLGVRPHA LIGHSVGEFV
AAVIAGVMRL EDAARLVARR GALMQAQPAG AMLSVRLGAA ELSARLGPLL SLAADNGPTA
CVVAGPFDAI ETLRASLQEE DIASRQLQTS HAFHSSMMDG AVAPFEALVG EVALHAPTVP
IFSTLTGRLL EEAEATSPAY WARHLRSTVQ FSPAVRSAMA QAVRPLFIEV GPRNTLATLV
RQHGAAEVMP LLHGEPADEA RTLRLALARL WTCGADVELS RLSVRTGAQR VRLPTYPFER
KRFWVDIAAA AASPAIPSPV LPPAQLPVAP STPALSVPPT FLEPTVTAAV PPPLPSSPAS
PALAAPTESM DTRLRSLFED ISGIDMMQAE GHAAFGELGL DSLTLTQVAT QIKKRFKVNL
SFRQLMENYR SFDTLSAFLR ESLPPEPVVA AVSAPASAAA VPLAMAAPVQ AAAAQPPAAF
LPGVTVPAAG GDIGSGPIVQ LVAQQMELMR RQLALLSGAA IETLPVASAM PAAAASTAAV
AAQPAADEPA PAREPQRYDV TKAFGAIARI HTQRTAEPSG RQKARLAAFM RRYVERTQKS
KQFTQANRPH MADPRVVNGF RPLTKEITYQ IVIERSKGSR LWDLDGNEYV DALNGFGMNM
FGWQPDFVQE AVRKQLDAGY EIGPQHPLAA EVTALICELT GCDRAALCNT GSEAVMAALR
IARTVTGRST VVVFTGSYHG TFDEVLVRAG KGGKGLSAAP GVMSGMFGDI RVLDYGTAEA
LAFIRENADD LAAVLAEPVQ SRRPDFQPRE FLQEVRTITE KSGTCFIFDE VITGFRVGLG
GAQELFGVRA DLATYGKVIG GGFPVGVIAG KRAFMDALDG GAWQYGDDSI PGVGVTYFAG
TFVRHPLALA AAKASLTHLK EAGPSLQAGL TGSTAAMADE LTAWCAEVGA PIAIRQFASL
WRVSWLEEHP LQDLLFAMMR SRGVHILDNF PCFLTSAHSA EDIATIQRVF KESVAEMQES
GFLPRRATVI TGFDYRKRCE EDGSVLARDV DGQPFWYVPD AASPTSLING KAAA
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