| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3156 |
|---|
| Symbol | |
|---|
| ID | 7974366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3316821 |
|---|
| End bp | 3319052 |
|---|
| Gene Length | 2232 bp |
|---|
| Protein Length | 743 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644793740 |
|---|
| Product | Membrane alanyl aminopeptidase |
|---|
| Protein accession | YP_002945040 |
|---|
| Protein GI | 239816130 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0308] Aminopeptidase N |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.315095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TGAATACACC CGTCGTTCAC CACCTGGCCC TCTCCGCCGT GATGCTTGCC
GCCTTGACGG CGTGCGGCGG TGGCGGAGAC GGCGGCGGCG GCGGCGGCGC ATCGCTTGGC
GGCGCCGGCC TTGGCGCGTC GTCGACGCTC ACGGCCGGCG CGCAGGATCC CGCCAAGGCA
CCCGAGGACG GCGCGCCCTC GGCGCAGGAA TCGGCCGTGG CCGCGGTCGA CCGCTCGGTG
AAGCCGATGG AGCTGCCCGA CACCGTCTGG CCCGTCAACT ACAAGCTGTG GTTCAGGCCC
GATGCGGCGC TGAAGACCTT CGTGGGGCGC GGCGACGTGG AGATCGAGGT GCTCAAGCCG
GTGGATGCCA TCGTGGTTGC CGCGCACAAC CTCAAGTTTG CGAACGGCCG CACCACCTTG
CGCAAGCTGT CGAATCCTTC GGAGGTGATT GCGCTGGTGC CCACGCCGCA GACGTTGGGA
GATTTCGCAC AGTTGCGGCG CAACGACGGG CAGATCGCCA AGGGCAAGTA CCTGCTGCAC
ATGGAGTGGG ACGGCAAGAT CCAGTTCTCC GATGCGGAAT ATTGCCCGCC CGAGGAGATG
GCCCGCAATC CGTTCTGCTC GGCGGCGACC GGCATCTTCA AGGTGGGCCT TTCCACGCCC
GAGGGCGTGA GCAGCGACGC GATCGTGACG CAGGGCGAAA CCAACTATGC GCGGCAGTGG
TTCCCGGGCT GGGACGAGCC GGCCTTCCGC CACAGCTTCG AGATCTCCGC CGAGGTGCCG
GGCGATTGGC AGACCGTGTC GAACGCCGCG CAGAAGTCGG CCGTCAAGCT GCCCGACGGC
TACCAGCAGG TGTCGTTCGA GAAGACGCCG TCGATGCCGA TGTACCTCGC GTTCTTCGGC
GGCGGCAAGT TCGACGTTCT GTCGGACACC TTCAAGAACC CGCTCGACGG CAGCGAGATG
CCGCTGCGCT GGTTCACGCC GCCGGGCCGC TCCACCTGGG CCAACTTTGC GATGGAGTGG
ACCAAGGTGG CGATGGACTA CTACTACAAC TACACCGGCA TTGCGCTGCC GTTCAAGAAG
TTCGACACCG TGGCGGCCAA CGACAGCTAC AACAACAAGC CCAACACCGG CTTTGGCGGC
ATGGAGAACT GGGGTTCGAT CTTCGAGTTT GCCGACCGCG TGCTGACCAA GCCGGGCGAA
ACGCCCACGC TGTATTCGGT GACGGTGGTG ACGCACGAGA TTGCGCACCA GTGGTTCGGC
GACCTCGTCA CGCTCGACTG GTGGGACAAC GTGTGGCTCA ACGAATCGTT CGCGCGCTGG
TTCGACCGCC GCACCACGAT CAAATTCCAT CCCGACTACT ACAGCTTTTC CGACTACGTG
CTCGACAAGC ACACCGTGAT CGTGGCCGAC CTGAAGGACA CGGCGGTGCC GGTGCAGCGC
AACCTCAACG ATGCGGGCTC GTTCGGCTTC ATCAGCCCGT CGATCTTCGT CTACAACAAG
GGCAGCCACG TGCTGGAGAC GGTGCAGAAC TACATCGGCG AGGAGGCGAT GCAGAAGGGC
CTGCAGATCT ACCTGAAGGA CTATGCCTTC GGCAACGCGA CGCCGTCGCG GCTGTGGACC
TCGCTGGAGA AGGCGAGCGG CGGCAAGAAG GTGGCGGACA TCGGCGACAG CTTCATTCGC
CAGACCGGCG TGCCGCTGCT GACGGTGGAC GCGCAATGCG CGGGCGACCG CACCTTCGTG
TCGATCAGCC AGGAGTCGTT CCCGAACCAG AACGCCTATC CGGCCTCGAC CTGGACCATT
CCCGTGACGC TGGCCTACGG CGACGCGATG GAGCAGCGCA AGACCTTCGT CATGGCCACC
AGTACCACGC AGCTGGAGCT CCCGGGCTGC ACCGCGGTGC TGGCCGGGCC CACGGGGCAG
GACTACTACG TGAGCAACTA CAGCACGCAG TCGTGGAGCG ACCTGCTGGC CAAGGCGCAG
AACTTTGCAG ACAACAAGCC GCTCCTGCTC AACATCGAGC GCGACGCGTT CCGGCTGCTG
TCGGTGGGGC GCATCACGCA GGGGCAGTAC GACCAGATCA AGGGCGTTCT CAATCTGCCG
ACGACGCTGC TCGCGAAGAC CGAGGCAAGC CAGCAGAAGA TGGTGGCGCA GGAGGCCGGC
GGCAAGGAAG ACTATCCGCA CGCGCTGCGC TACCAGGGCA GCATGAAGCT GCGCGAGAAC
GAGAAGCGCT GA
|
|---|
| Protein sequence | MKKLNTPVVH HLALSAVMLA ALTACGGGGD GGGGGGASLG GAGLGASSTL TAGAQDPAKA
PEDGAPSAQE SAVAAVDRSV KPMELPDTVW PVNYKLWFRP DAALKTFVGR GDVEIEVLKP
VDAIVVAAHN LKFANGRTTL RKLSNPSEVI ALVPTPQTLG DFAQLRRNDG QIAKGKYLLH
MEWDGKIQFS DAEYCPPEEM ARNPFCSAAT GIFKVGLSTP EGVSSDAIVT QGETNYARQW
FPGWDEPAFR HSFEISAEVP GDWQTVSNAA QKSAVKLPDG YQQVSFEKTP SMPMYLAFFG
GGKFDVLSDT FKNPLDGSEM PLRWFTPPGR STWANFAMEW TKVAMDYYYN YTGIALPFKK
FDTVAANDSY NNKPNTGFGG MENWGSIFEF ADRVLTKPGE TPTLYSVTVV THEIAHQWFG
DLVTLDWWDN VWLNESFARW FDRRTTIKFH PDYYSFSDYV LDKHTVIVAD LKDTAVPVQR
NLNDAGSFGF ISPSIFVYNK GSHVLETVQN YIGEEAMQKG LQIYLKDYAF GNATPSRLWT
SLEKASGGKK VADIGDSFIR QTGVPLLTVD AQCAGDRTFV SISQESFPNQ NAYPASTWTI
PVTLAYGDAM EQRKTFVMAT STTQLELPGC TAVLAGPTGQ DYYVSNYSTQ SWSDLLAKAQ
NFADNKPLLL NIERDAFRLL SVGRITQGQY DQIKGVLNLP TTLLAKTEAS QQKMVAQEAG
GKEDYPHALR YQGSMKLREN EKR
|
|---|
| |