| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3135 |
|---|
| Symbol | |
|---|
| ID | 7974345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 3294856 |
|---|
| End bp | 3295836 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644793720 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002945020 |
|---|
| Protein GI | 239816110 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.82433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGA CGCTCTCCTC TTTCCTGCGC GCCGGCATGG CCACCCTGCT CTCGGCGGCG
GCCGCATCGA CCGCGCTCGC AGACGGCTGG CCCGCCAAGC CCATCACCAT CGTCGTGCCC
TTCGTGGCGG GCGGCACCAC CGACATCGTC GCGCGCACCG TGGGCCAGAA GCTCTCGGAA
TCGCTCGGGC AGCCGGTCAT CATCGACAAC CGTGGCGGCG CGGGCGGCAC CGTGGGCGCG
GCCATCGCAT CGAAGGCGCC GGCCGACGGC TACACGCTGT TCCTGGCCAC CATCGCGCAT
TCGATCGCGC CGGGCCTCTA CAAGCGCCTG CCCTACGACT TCCGGCGCGA CTTCGATCCG
GTGGCGCTCG TGGCCTCCAC GCCCAACGTG CTGGTGGTCA ACGACAAGGT GCCGGCCAGG
TCGGTGGCGG AACTGGTGGC CTACATCAAC GCCAATCCCG GCAAGGTGAA CTTCGGCTCG
GCCGGCAACG GCAGCACCGA GCACATCTCG GGCGAGCTGT TCCGCTCGAT GACCCGGACC
GACGTCACCC ACGTGCCCTA CAAGGGCGGC GCGCCGATGA TGGCGGACCT GATCGGCGGC
CAGATCCAGA TGGCCATCGA GACCAGCCCC TCGGCCGCGC CGCACGTGCG CGGCGGCAAG
GTGCATGCGC TGGCCGTGAC CACGCTGAAG CGCTCGCCGG CCTACCCGGG CGTGCCCACG
CTGGACGAGG CCGGCCTCAA GGGCTACGAC ATGACCACCT GGTTCGCACT CATGGCACCG
CACGGCACGC CGCCGGCACT GGTCACGCGC CTGAACGCCG AAGTCGCCCG CGCGCTGCAG
CAGCAGGACG TGGCCAGGCG TTTCGAGGAG CAAGGCGTAA CAGCAGGCAA CATGCGGCCG
GCCGAGCTCA AGGCCTTCAT CGGCAGCGAA ACCACCAAGT GGGTGAAGGT GGCCCGCGAC
GCCGGCGCGA CCGCCGAATA G
|
|---|
| Protein sequence | MNKTLSSFLR AGMATLLSAA AASTALADGW PAKPITIVVP FVAGGTTDIV ARTVGQKLSE
SLGQPVIIDN RGGAGGTVGA AIASKAPADG YTLFLATIAH SIAPGLYKRL PYDFRRDFDP
VALVASTPNV LVVNDKVPAR SVAELVAYIN ANPGKVNFGS AGNGSTEHIS GELFRSMTRT
DVTHVPYKGG APMMADLIGG QIQMAIETSP SAAPHVRGGK VHALAVTTLK RSPAYPGVPT
LDEAGLKGYD MTTWFALMAP HGTPPALVTR LNAEVARALQ QQDVARRFEE QGVTAGNMRP
AELKAFIGSE TTKWVKVARD AGATAE
|
|---|
| |