Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3106 |
Symbol | |
ID | 7974316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3267321 |
End bp | 3267878 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644793691 |
Product | type IV pilus modification protein PilV |
Protein accession | YP_002944991 |
Protein GI | 239816081 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4967] Tfp pilus assembly protein PilV |
TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.457485 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAGAG GGCGGAACGT GCCGATCAAT TCGATTCGCG CGCCGCGCGG CCAAGCGGGC TTCTCGATGA TCGAGGCCCT GGTGGCCATC CTCGTGCTCT CGTTCGGCCT GCTCGCGCTG GCCGGCTTCC AGTTGCGTGT GCTCTCCGAC AGCGTGGGCG CGAGCAACCA GAACATCGCC GCGCTGCTGG CCGGCGACAT GGCCGATCGC ATCCGTGCGA ATCCCGTGGC CGGTGCCGTG TCGGCCAGCC CCTACGTGGC CGGCTGGTCG GCGGCGAACG CCACCGCGCC CACCCCCGCC TGCGCAGGAG CGAAGGCCCG TTGCACCGCC GCTCAATTGG CGGCCCACGA TCTGTGGACC TGGAAGCAAA GGGTGGCGAG TGCGTTGCCC GGCGGCGTGG CCGACGTGCA GAGCAAGAAG GCCGTCGGCG GCCTGCTGTT CGTGCACATC GCCTGGGACG AACCCGCTGC AGTCAACCCG ATCGCACCCG ATTCGGCCTG GGGCTGCCCG CGCGGCAAGG CCTGCCAGGA AGCCATCGTC GCGGTGCCAC AGCCATGA
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Protein sequence | MLRGRNVPIN SIRAPRGQAG FSMIEALVAI LVLSFGLLAL AGFQLRVLSD SVGASNQNIA ALLAGDMADR IRANPVAGAV SASPYVAGWS AANATAPTPA CAGAKARCTA AQLAAHDLWT WKQRVASALP GGVADVQSKK AVGGLLFVHI AWDEPAAVNP IAPDSAWGCP RGKACQEAIV AVPQP
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