Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3103 |
Symbol | |
ID | 7974313 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3262434 |
End bp | 3265781 |
Gene Length | 3348 bp |
Protein Length | 1115 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644793688 |
Product | type 4 fimbrial biogenesis protein PilY1 |
Protein accession | YP_002944988 |
Protein GI | 239816078 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGTGCG GCCTCGTGCT GGCGCAGACC GCCGGGCACG CCGCGCAATA TCCGCTGTCC CAGGCGCCGC GCAACACGGC GGTCAAGGAG CCGGCGCCGA ATGTGATCGT GTCGGTCGAC AACTCGGGCA GCATGGCGGC GTCGTCGCGA GCGTCGGACG GAAATTGGGC ACCGCCGGCC GGAACACCCA CGCGGCTCGA AGCGCTGAAG ACCGCGCTCA GGGACAACTT CTCGGCGGCC AACATTCCCA ACGGCCGGAT CCGCCTTTCC TGGCAGGCGA TGAACAACAA CAAGGACGGC AGCTGCGTCG GCTTCTTCGG CGACATCGCC CCTGGCATCT ATCAGGCCGG CAGTTGTCTC GTCAATGGCC GAGCCAATGC GAACCTGATG CGTTCGCTGG ACGACACGCA CCGCGCCAAT TTCATGAGCT GGGTCGACGC CCTGGCCGCG GAAGGTGGAA CACCCTTGCA CGCCATGATG ACCCGCGCTG GCGAATACAT GACGACCACC GGCCGGTACA GCCCGTACTC GAACGACCCT GGCGTGGAGG GCGCCGCCCA ATCGAGCTGC CGCAAGGCCT TCCACATCTT CATGACGGAC GGCGACTACA ACTTCTTCGG CTTCAACCCG GATCCCGCGG CGCTCAACAT GCCGGCCATC GGCAACGCGG ATGGAACGAG TCGCGCCCTG CCTGACGCCG TGACCTATGT GCCGCGCGCG CCCTACAAGG ACAACGCGGG TGCCGTCAGC AACAGCGCCA ACTGGAGGAA GTACGGTTCC GGGTGGAGGC CGACGGCGGA ATACCGGCCC ACGTTGGCCG ACATGGCATT TCACTACTGG GCCACTGACC TGCAGCCCGA TGTCCCCAAC AAACTCAAGA AGATCGTTGC CGAGCCCGGC AATGCGACTG TAGGAAAGGC GACGGTCCCA GAGTACTGGA ACCCCAAGAA CGATCCCGCC ACTTGGCAGC ACCTGATCAC CTACACCATC GGGTTCGGCG CTGCCTCGTC GTGGGCGGGC ACGCCGGCCA TTTCAGCGAA TGCGTCGCAG CCGACCTACA GTGGGGACTA TGCAGGACTG GTCGATGGAA CCGCTGCCTG GCGGAATCCG TTGGCGAGCA CGCTGGAAAC GACGGAGTTC ACCTGGAACG ATGGAAGCGT GACAACGGGA ACCCCGCGCT GGAGTTCCGG CGGTGGTGCT TATGGTTATT ACCACGAGAG GGCCGACAAC GCCGCCGCCG TGCGCATGGA CCTCTGGCAC GCCGCGCTCA ACAGCCGCGG CACCTTCACG CCAGCGGCGA ATGCGAAGGC GCTCAGCGAT GCCTTCCGGT CCATCCTCTC GCAGATCCTG CTCAACACCA GTGCCTCGCT GACCTCGATC TCGGCCAGCG GCTCCAGGGT TTCGACCGCC ACTTCGGCCT ACCAGGCCGG CTACGACACG GCCGACTGGT CGGGCAAGCT GACGGCCACT CCGTTCGGCA GCAATGGCAA GCTGGCCGCC GCGCCCGCGT GGTCGGCGCG CGAACTGCTT GATGCGCGCA TGGCTGTGCC CGGCGCGCAC GACGGCAATC GCAAGGTGCT GAGCTTCTCG GGCACCAGCG CCGCGGCCAG CGGGGCGGGC GTGCCGTTTC GGTGGGCCAA CCTGAGCGAG GCGCAGAAGG CGGCGCTCAA GGGCAGCACC GCCACCGACG CGGCAAGCAC CGCACTCGGC CAGGGCGTGC TCGACTTCCT GCGCGGCGAC CGCAGCAACG AGGGCGCCGG CCTCAACCTG CGCAAGCGCG GCCATGTGCT GGGGGACATC GTGGGCTCCA GCGTCCGGTA TGTGGGGAAG CCCAACAGCG GCTTCACCCA TGAAGGCTAT GCCGCATTCG CCTCGACCAT CGCCCGCGCG CCGATGGTCT ATGTGGGTGC CAACGACGGC ATGCTGCATG CCTTCAACGC GGGCACCGGC CAGGAGGCGT TCGCCTATGT GCCGGAAGGC GTCTATGGCA CGGCGGCGGC GCCCCAGCTC AAGAAGCTCA GCGAAAGCAC CTACTCGCAC AGGTACTACG TCGACGGCAG CCCGTTCGTG GCCGACATCT ACATGGGTTC GGCCGCCGAC GCCAAGGCCA CCGACACCGA GAAGGCGAAG CTGTGGAAGT CCTTCCTCGT GGGGACGCTG GGGGCGGGCG GCAAGGGGTA TTTCGTGCTC GACGTCACCA AGCCCGAGAA CATCGGCGAG GCCAACGCCG CCGGCGTGGC CCTGATCGAT ACCACCGCCC TTGCCGACGA CGACCTCGGC CACCAGTTCC AGCAACCCGT GCTCGATTCC TTTTCGAGGC GCGCGCTGCA GGTGGCGCGG CTCAACAACG GCCGCAGGGC CGTGATCCTG GGCAACGGCT ACAACAGCAC GAGCGAGAAG GCGATGCTGT GGATCCAGTA CCTCGACGGC GACAAGTCCG TGCTGAAGAT CCCCGCGCCG GCCACGCAGG CCGCCGGCAC CGGCAACGGG CTGTCGGCAC CGCAGGTGGT GGACAGCAAC GGCGATGGCA AGGTCGACTA CGTCTATGCC GGCGACCTGC TCGGCAATCT CTGGAAGTTC GACCTGAGCA GCGCCAAGAG CAGCGACTGG AAGGCCACCC TGGGCGCATC GAGCCTGGAC GACGCGCCGC TGTTCGCCGC CGGCGCCACG CAGCCGATCA CGGCCGCGCC GCTGGTCGTC GACCATCCGC GCGGCGGCTA CATGGTGATG TTCGGCACCG GCCGGCTGTT TGCCGCCGGC GACGAAGGCA GCACCGCCCA GCAGTACCTG TACGGCGTCT GGGACCGCGC CAACGGCAGC ACGGGCACCG CGGCGCTGGC CGACCTGGTG GCGCAGACCA TCGGAACCGG CACGGTCAAG GAAGGCGACG TGGAATTCCG CACCGCGTCG AACCACGGCG TGAGCTACAG CGGCTCGGGC GGCAAGCGCG GCTGGTACCT CCAGCTGGGA ACCGCCGGCG AACGCATCGT CTATCCAGGC GATGCGCTGA GCGGCAGCGC GGGGCTGTTC TCGTCCACCA TTCCCGGTTC GGCGAGCAAT TCGCTCGACT GCGCGCCGGG CACCAGCGAC GACGGCTGGT CGATGGTGGT CGACTTCTTC AGCGGCGTGG TCCCCGACGG CATTGCCTAC AACGGCTCCA CCAGCGCGCT GGGCAGCTAC CTCGGCTTCC GGAACCACTC AGGCCGCGAC GACATCGTCT TCCGGCCGCA GGACGCCGCT GAAAAAGGCA AGCACGTGAT CTGCAATGCG GCCGGCGGCT GCAACGAGAC CGAGCTGCCG CAAGCCGTGC GCCGCTTCGG CTGGCGCAAC CTGATCTCGT CGAACTGA
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Protein sequence | MLCGLVLAQT AGHAAQYPLS QAPRNTAVKE PAPNVIVSVD NSGSMAASSR ASDGNWAPPA GTPTRLEALK TALRDNFSAA NIPNGRIRLS WQAMNNNKDG SCVGFFGDIA PGIYQAGSCL VNGRANANLM RSLDDTHRAN FMSWVDALAA EGGTPLHAMM TRAGEYMTTT GRYSPYSNDP GVEGAAQSSC RKAFHIFMTD GDYNFFGFNP DPAALNMPAI GNADGTSRAL PDAVTYVPRA PYKDNAGAVS NSANWRKYGS GWRPTAEYRP TLADMAFHYW ATDLQPDVPN KLKKIVAEPG NATVGKATVP EYWNPKNDPA TWQHLITYTI GFGAASSWAG TPAISANASQ PTYSGDYAGL VDGTAAWRNP LASTLETTEF TWNDGSVTTG TPRWSSGGGA YGYYHERADN AAAVRMDLWH AALNSRGTFT PAANAKALSD AFRSILSQIL LNTSASLTSI SASGSRVSTA TSAYQAGYDT ADWSGKLTAT PFGSNGKLAA APAWSARELL DARMAVPGAH DGNRKVLSFS GTSAAASGAG VPFRWANLSE AQKAALKGST ATDAASTALG QGVLDFLRGD RSNEGAGLNL RKRGHVLGDI VGSSVRYVGK PNSGFTHEGY AAFASTIARA PMVYVGANDG MLHAFNAGTG QEAFAYVPEG VYGTAAAPQL KKLSESTYSH RYYVDGSPFV ADIYMGSAAD AKATDTEKAK LWKSFLVGTL GAGGKGYFVL DVTKPENIGE ANAAGVALID TTALADDDLG HQFQQPVLDS FSRRALQVAR LNNGRRAVIL GNGYNSTSEK AMLWIQYLDG DKSVLKIPAP ATQAAGTGNG LSAPQVVDSN GDGKVDYVYA GDLLGNLWKF DLSSAKSSDW KATLGASSLD DAPLFAAGAT QPITAAPLVV DHPRGGYMVM FGTGRLFAAG DEGSTAQQYL YGVWDRANGS TGTAALADLV AQTIGTGTVK EGDVEFRTAS NHGVSYSGSG GKRGWYLQLG TAGERIVYPG DALSGSAGLF SSTIPGSASN SLDCAPGTSD DGWSMVVDFF SGVVPDGIAY NGSTSALGSY LGFRNHSGRD DIVFRPQDAA EKGKHVICNA AGGCNETELP QAVRRFGWRN LISSN
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