Gene Vapar_3088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3088 
Symbol 
ID7974298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3244980 
End bp3245960 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content64% 
IMG OID644793673 
Productacetyl-CoA carboxylase, carboxyl transferase, alpha subunit 
Protein accessionYP_002944973 
Protein GI239816063 
COG category[I] Lipid transport and metabolism 
COG ID[COG0825] Acetyl-CoA carboxylase alpha subunit 
TIGRFAM ID[TIGR00513] acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCGAAAC GAACCTTCCT CGACTTCGAG CAGCCCATTG CTGAACTCGA AACAAAGATC 
GAAGAACTGC GCTATGTACA GACCGAATCG GCGGTCGACA TCTCGGAGGA AATCGACCAG 
CTCGGCAAGA AGAGCCAGCA GCTCACCAAG GACATCTACA GCGACCTGAC GCCCTGGCAG 
ATCACCAAGA TCGCGCGGCA TCCGGAGCGG CCCTACACGC TCGACTACGT CAACGAGATC 
TTCACCGACT TCGTCGAACT GCACGGCGAC CGGCACTTTT CGGACGACCT CTCCATTGTG 
GGCGGCCTGG CGCGCTTCAA CGGCACGCCC TGCATGGTGC TCGGCCACCA GAAGGGGCGC 
GACACCAAGG AGCGCACCGC GCGCAACTTC GGCATGAGCA AGCCCGAGGG CTACCGCAAG 
GCGCTGCGCC TCATGAAGAC GGCCGAGAAG TTCAAGCTCC CGGTCTTCAC CTTCGTCGAT 
ACGCCCGGTG CCTATCCGGG CATCGACGCC GAGGAGCGCG GCCAGTCCGA AGCCATCGGC 
CGCAACATCT ACGAGATGGC GCAGCTCGAG GTGCCGATCA TCGTCACCAT CATTGGCGAA 
GGCGGCTCCG GCGGCGCGCT GGCCATTTCG GTGGGCGACC AGCTCGTGAT GCTGCAGTAT 
TCGATCTACT CGGTCATCAG CCCCGAAGGC TGCGCCTCCA TTCTCTGGAA GACCAGCGAC 
AAGGCGCAGG AAGCGGCCGA TGCCCTCGGC ATCACGGCGC ACCGCCTGAA GGCGCTGGGC 
CTGGTCGACA AGATCGTGAA CGAACCGGTC GGCGGCGCGC ACCGCGACCA CCGCCAGATG 
GCCGCTTTCC TCAAGCGCGC GCTCAACGAC GCCTTCCGCC AGGTCAGCGA CCTGAAGCCG 
AAGGAACTGC TCGAGCGCCG CTACGAACGC CTGCAGAGCT ACGGGCGCTT CAACGACACC 
AAGGCCGACA CCGGCAGGTA A
 
Protein sequence
MAKRTFLDFE QPIAELETKI EELRYVQTES AVDISEEIDQ LGKKSQQLTK DIYSDLTPWQ 
ITKIARHPER PYTLDYVNEI FTDFVELHGD RHFSDDLSIV GGLARFNGTP CMVLGHQKGR 
DTKERTARNF GMSKPEGYRK ALRLMKTAEK FKLPVFTFVD TPGAYPGIDA EERGQSEAIG 
RNIYEMAQLE VPIIVTIIGE GGSGGALAIS VGDQLVMLQY SIYSVISPEG CASILWKTSD 
KAQEAADALG ITAHRLKALG LVDKIVNEPV GGAHRDHRQM AAFLKRALND AFRQVSDLKP 
KELLERRYER LQSYGRFNDT KADTGR