Gene Vapar_3073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3073 
Symbol 
ID7973793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3229336 
End bp3230040 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content71% 
IMG OID644793657 
Producthypothetical protein 
Protein accessionYP_002944958 
Protein GI239816048 
COG category[S] Function unknown 
COG ID[COG1891] Uncharacterized protein conserved in archaea 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGATGC GCATGCTGGT CAGTGTGCGC AGCGTGGACG AAGCCCTGCT CGCGGCCCGC 
GGCGGCGCCG ACTTCATCGA CCTGAAGGAA CCCAACGAAG GCGCACTGGG CGGCCTGCCG 
GTGGCAACCA TCGGCGCCAT CGTGAGTGCG CTGCGCGGGC ACGGCATCGG CCTGCCCGTG 
AGCGCGACGA TCGGCGACCT GCCGATGCAT GCGCTGGACG CGATCCTCGC GCAGGTGGAC 
GCGGTGGGTG CCTGCGGCGT CGACTATGTG AAGGTCGGCA TCGAGCGTGG GCCCAAGGCC 
CTGGCGGTGC TCGATGCGCT GGCGGCCTGC CACTGGCCGG TGGTGCCGGT CTTCATCGGC 
GACCACGGGC TCGATGCCGC GCTGACCGCG CATGCCTGCA CGCTCGGCTT TCCCGGACTC 
ATGGTCGATA CCGCCGACAA AGAGGCCGGC AGCCTGTTCG ATGCCGTGCC GATGGCCGAT 
CTGCGTGCCT TCCTGGCCCA GGTGCGCGCC GCGGGGCAAA TGGCCGGCGT GGCGGGCGCG 
CTGCGCACGG CACATGTTCC GCTGCTGCAG TCGCTGGCGC CGGACTTCGC GGGATTTCGC 
AGCGCCGTCT GCGTGGGCGA CCGCAAGGCG GCGCTCAGCC CGGAGCGGCT TGCGGCACTG 
GCCGCGCTGC TGCACGGCGA GGCGGTGGAG CCTGTAGCGG TCTGA
 
Protein sequence
MTMRMLVSVR SVDEALLAAR GGADFIDLKE PNEGALGGLP VATIGAIVSA LRGHGIGLPV 
SATIGDLPMH ALDAILAQVD AVGACGVDYV KVGIERGPKA LAVLDALAAC HWPVVPVFIG 
DHGLDAALTA HACTLGFPGL MVDTADKEAG SLFDAVPMAD LRAFLAQVRA AGQMAGVAGA 
LRTAHVPLLQ SLAPDFAGFR SAVCVGDRKA ALSPERLAAL AALLHGEAVE PVAV