| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3061 |
|---|
| Symbol | |
|---|
| ID | 7973781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3217761 |
|---|
| End bp | 3218429 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644793645 |
|---|
| Product | HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| Protein accession | YP_002944946 |
|---|
| Protein GI | 239816036 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGG CGCTGTTCGA CCTGGACCAC ACGCTGATTC CGTTCGACAG CGGCATGGCC
TGGACGCGCT TCCTGGTGGC GCGCGGCGTG CTGCCGGCCG ATGCCGAGAC GGTCTACCTG
GGCTACTGCC AGCAGTACGT GGACGGCACG CTGGACATCC GCGAGCTGCA TCGCGCGAGC
GTCGCGCCGC TCGCAAGCTT CGGCATGGCC GCGCTGCGCC AGTGGGCGGC GGAGTTCGAA
GCCGAGATCG CGCCGCGGGT GCCCGAGCCG ATGCGTGCGC TGGTGCGTCG CCACCAGGAC
GCGGGCCACG TCTGCGCCAT CGTGACCGCC ACCACCCGCT TCATCGCCGA GCCCTTCGGC
CGCCTGTTCG GCGTGGCCGA CGTGCTGGCG ACGCGCTCGC TGGTGATCGA CGACACGGTC
GATGGCGCCA TCGACGGCGA CCCGTGCTAC GGCGTGCACA AGCTGATGCA TGTGAACCAG
TGGCTCGCCA CGCGCGGCAC GCGGCTCGAT GCACTCGAGC AATCGTGGTT CTATTCCGAT
TCGGCCAGCG ACCTGCCGTT GCTGGGTGCC GTGTCCGATC CGGTGGCGGT GGCGCCCGAC
GATCGCCTGC GCGCGCGGGC CGTCGAGGCC GGCTGGCCGA TCATCGAACG GACGCCGCCC
GGCGGCTAG
|
|---|
| Protein sequence | MKLALFDLDH TLIPFDSGMA WTRFLVARGV LPADAETVYL GYCQQYVDGT LDIRELHRAS
VAPLASFGMA ALRQWAAEFE AEIAPRVPEP MRALVRRHQD AGHVCAIVTA TTRFIAEPFG
RLFGVADVLA TRSLVIDDTV DGAIDGDPCY GVHKLMHVNQ WLATRGTRLD ALEQSWFYSD
SASDLPLLGA VSDPVAVAPD DRLRARAVEA GWPIIERTPP GG
|
|---|
| |