| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3039 |
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| Symbol | |
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| ID | 7973759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3198681 |
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| End bp | 3199394 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644793623 |
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| Product | ABC transporter related |
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| Protein accession | YP_002944924 |
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| Protein GI | 239816014 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.250558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCGAA CCATCGACTT AACCAAGCGC TATGGCACGC GCACGGCGCT GCAGTCGTTG
TCGCTGCATC TGCCTGCGGG CCAGTTCGTG GCGCTGCTCG GGCCCAACGG CGCGGGCAAG
TCGACGCTGT TCCAGGTGCT CACGGGCATG TTCGCGGCCG ACGAAGGCGA GGTCGAGGTG
GCCGGCCATT CGCTGCGCCG CTCGGCAACG GCGGCGCTGC GGCACATCGG CGTCGTGTTC
CAGCAGATGT CGCTCGACCT GGACCTGAGC ATCCGGCGCA ACCTGTTGTT CCAGGCCGAC
CTGCATGGCC TGCCGCGGCG GCTTGCGGCC GAACGCATCG CGTCGGCCTG CGAGCGCCTG
AACATCGACG CCAATCTCGA CCGCAAGGTG CGCGAGCTCT CGGGCGGCAA CCGGCGCAAG
GTCGAGCTGG CGCGCGCCGG GCTGCACCGG CCGGCCGTGC TGCTGATGGA CGAAGCCACC
GTCGGGCTCG ACCCCAGATC GCGCCAGGAC CTGCTGGCGG CCCTGCATGC GGACGTGCGC
GAGCGCGGCG TGTGCGTGCT GTGGGCCACC CACCGGGTCG AGGAGGCCGA GGAGGCCGAC
CGCGTGCTGG TGCTGCACAA GGGACAGCTG CTGGCGGACG GCACGCCGGC GCAGGTGGGC
CAGAGCCTTG GCGGTGCCAC GCTGGAGGCG GGCTTCATCG CACGCACCGC CTGA
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| Protein sequence | MLRTIDLTKR YGTRTALQSL SLHLPAGQFV ALLGPNGAGK STLFQVLTGM FAADEGEVEV
AGHSLRRSAT AALRHIGVVF QQMSLDLDLS IRRNLLFQAD LHGLPRRLAA ERIASACERL
NIDANLDRKV RELSGGNRRK VELARAGLHR PAVLLMDEAT VGLDPRSRQD LLAALHADVR
ERGVCVLWAT HRVEEAEEAD RVLVLHKGQL LADGTPAQVG QSLGGATLEA GFIARTA
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