| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3027 |
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| Symbol | |
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| ID | 7973747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3186038 |
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| End bp | 3186769 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644793611 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
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| Protein accession | YP_002944912 |
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| Protein GI | 239816002 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00159379 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAAAG AAGAGCTGTG CGGCATCGAT GCGATCGCCT TCGATCTCGA CGGCACGCTG
GTCGACAGCG CGCCCGACAT CCGGCAGGCG CTGAACCTCG CGCTCGACGA AGCCGGGCTC
GCCTGCTTCG AGCTGGACAC CGTGCGCGCA TGGATCGGCG ACGGCCCCGA CGCGCTGATC
CTGCAGGCGC TGCGCGAGCA CGGGCTCGGC GGCAGCGAGG CGCTGCGCGG CCGGCTGCGC
AAGTCCTTCG ATGCCGCCAC GCTGGCGGCG CCCTTGAAGT TCGGCAGCGT GTTCGAGGGC
ATTGCCGCAC TCGTCTCCGG CCTGCGCCGC ACGCTGCCGA TGGTGGTGGT CACGAACAAG
CCGACGCCGC TGGCACGCGC CGTGCTGGAT GCAGCGGGTC TGCTGCCGGC GATGGCAGGG
GTCCACGGTG CCGACACCGC GGCGCAGCGC AAGCCCGCGC CGCTCCTGCT GCAGGCCGCG
GCGCGCCAGC TGGGCGTGGA ACCCGCGCGC CTGCTGATGG TGGGCGACGG CCCGGCCGAC
CTGCTCGCGG CGCAGGCCGC AGGCTGTCCG GCGGCGCTGG TGGCCTGGGG CTATGGCGGC
CATGCGGCGG GGAATGCGGC TGAAGCGGCG CGCGCGTGGC GCGTCTCGAC GCCGCAGCAG
CTGCTGCTAA GGGCATGCGA GTCGCGCGCC GCGGCACGCC GAGACGAAGA AACGACGACC
CGGATTTTTT GA
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| Protein sequence | MTKEELCGID AIAFDLDGTL VDSAPDIRQA LNLALDEAGL ACFELDTVRA WIGDGPDALI
LQALREHGLG GSEALRGRLR KSFDAATLAA PLKFGSVFEG IAALVSGLRR TLPMVVVTNK
PTPLARAVLD AAGLLPAMAG VHGADTAAQR KPAPLLLQAA ARQLGVEPAR LLMVGDGPAD
LLAAQAAGCP AALVAWGYGG HAAGNAAEAA RAWRVSTPQQ LLLRACESRA AARRDEETTT
RIF
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