| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3022 |
|---|
| Symbol | |
|---|
| ID | 7973742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3179684 |
|---|
| End bp | 3180700 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644793606 |
|---|
| Product | fructose-bisphosphate aldolase, class II, Calvin cycle subtype |
|---|
| Protein accession | YP_002944907 |
|---|
| Protein GI | 239815997 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0191] Fructose/tagatose bisphosphate aldolase |
|---|
| TIGRFAM ID | [TIGR00167] ketose-bisphosphate aldolases
[TIGR01521] fructose-bisphosphate aldolase, class II, Calvin cycle subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.625607 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATGA TTTCGCTGCG CCAATTGCTG GACCACGCCG CCGAGCACCA ATACGGCGTG
CCGGCGTTCA ACGTCAACAA CCTGGAGCAG ATCCAGGCCA TCATGCAGGC CGCGCGCAAG
ACCGACAGCC CCGTCATCCT GCAGGCCTCG GCCGGTGCGC GCAAGTACGC GGGCGAAGCC
TTCCTGCGCA AGATGGTCGA GGCCGCCGCC GAAATGTACC CCGAGATCCC GATCGTGATG
CACCAAGACC ATGGCGCAAG CCCGTCGATG TGCATGCAGG CCATCCGCTC GGGCTTCACC
AGCGTGATGA TGGACGGCTC GCTGATGGAA GACGCGAAAA CGCCTGCGAG CTACGACTAC
AACGTGGGCG TGACGAGCCG CGTGGTGGAG ATGGCGCATG CGGTCGGCGT CTCGGTCGAG
GGCGAGCTGG GCTGCCTCGG CTCGCTCGAG TCGGGCATGG CGGGCGAGGA AGACGGCAGC
GGTGCCGAGG GCGTGCTGAC GCACGACCAG CTGTTGACCG ATCCGCAGCA GGCGGCCGAC
TTCGTCTCGC GCACCGGCGT GGATGCGCTG GCCATTGCCA TCGGCACCTC GCATGGCGCC
TACAAGTTCA GCCGCAAGCC GACCGGCGAC ATCCTTGCGA TCGACCGCAT CAAGGAGATC
CATGCGCGCA TTCCGAAGAC GCACCTCGTG ATGCACGGCT CCTCGTCGGT GCCGCAGGAA
TGGCTGGCCG TGATCCGCGA CTTTGGCGGC GACATCAAGG AAACCTACGG CGTGCCGGTG
GAGGAGATCC AGGAGGGCAT CCGCCATGGC GTGCGCAAGG TCAACATCGA CACCGACATC
CGGCTCGCGA TGACCGGCGC GATGCGCCGC GCGATGGGCC AGGACCGCAG CGAATTCGAT
CCGCGCAAGT TCCTCAAAGA AGCGACCGCG GCGGCGCGCG ATGTCTGCAT CGACCGCTTC
CAGGCCTTCG GCACCGCCGG CATGGCGTCG CGGATCAAGC CGGCGGCACT GCAGTAG
|
|---|
| Protein sequence | MAMISLRQLL DHAAEHQYGV PAFNVNNLEQ IQAIMQAARK TDSPVILQAS AGARKYAGEA
FLRKMVEAAA EMYPEIPIVM HQDHGASPSM CMQAIRSGFT SVMMDGSLME DAKTPASYDY
NVGVTSRVVE MAHAVGVSVE GELGCLGSLE SGMAGEEDGS GAEGVLTHDQ LLTDPQQAAD
FVSRTGVDAL AIAIGTSHGA YKFSRKPTGD ILAIDRIKEI HARIPKTHLV MHGSSSVPQE
WLAVIRDFGG DIKETYGVPV EEIQEGIRHG VRKVNIDTDI RLAMTGAMRR AMGQDRSEFD
PRKFLKEATA AARDVCIDRF QAFGTAGMAS RIKPAALQ
|
|---|
| |