| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3002 |
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| Symbol | |
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| ID | 7973722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3156903 |
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| End bp | 3158780 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793587 |
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| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
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| Protein accession | YP_002944888 |
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| Protein GI | 239815978 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTCCC CTTCCCTCGC CCTGCCAGAC GGCCGCGTTC TCGCCGTCGA CGATCTCACC
GTGCGCTTCT CGACCTCCGA GCGCACGGTC GATGCGGTCA AGAACCTTTC CTTCCACGTC
GACCATGGCG AAACGCTCGC GGTGGTCGGC GAGTCGGGCT CGGGCAAGTC GGTGACCTCG
CTCGCGCTGA TGCGGCTGGT GGAACACGGC GGCGGACGCA TCCTGGGCGG ACGCATGGCG
TTTCGCCGCC GCAATGGCGA AGTGCTCGAC CTCGCACAGG CGCGCGACAC CGAGATGCGC
AACATCCGCG GCGCCGACAT CGCGATGATC TTCCAGGAGC CGATGACCTC GCTCAACCCG
GTGTTCACTG CCGGCGAGCA GATTGCCGAG GCCATCCGCA TCCACCAGGG CAAGAACAAC
GCGGCCGCGC GCGCCGAGGC CCTGCGCATG CTGGAGCTGG TGCGCATTCC CGAAGCGCGC
AACGTGCTCG ACCGCTTTCC GCACCAGCTC TCGGGCGGCA TGCGCCAGCG CGTGATGATC
GCGATGGCGC TCTCGTGCAA GCCGCAGCTG CTGATTGCCG ACGAACCCAC CACCGCGCTC
GACGTGACCA TCCAGGCGCA GATCCTCCAG CTCATCCGCG AGCTGCAGAA GGAGATGCGC
ATGGGCGTGC TCTTCATCAC GCACGACATG GGCGTGGTGG CCGAGATTGC CGACCGCGTG
CTCGTGATGT ACCGCGGCGA CAAGGTCGAA GCGGGCAGTT CCGATACGGT GTTCGCATCG
CCGCAGCACC CCTACACCAA GGCGCTGCTG TCGGCCGTGC CCAAGCTCGG CGCGATGCAG
GGCACCGACC TGCCCGCCAA GTTCGAGCTG CTGCGCACCG AGGGCACGCC CGAGACGGTG
CCGTCCACCC ACACCACGCC GCAGACCACC GTGCGCGAGG GCGCGGGCCC GATCCTGCGC
GTGCGCGACC TCGTCACGCG CTTCGAGGTG CGCAGCGGCC TGTTCGGCCG CGTGAAGCGC
CGCGTGCATG CGGTGGAAAA GATCAGCTTC GACCTCTACC CCGGCGAGAC GCTGGCGCTG
GTCGGCGAAT CGGGCTGCGG CAAGTCGACC ACGGGCCGCT CGCTGCTGCG CCTGGTCGAG
AGCCAGAGCG GCGCGATCGA GTTCGGCGGC CAGAACATCC GCGAGCTGCC CACGCGCGAG
CTGCAGGCCC TGCGCCGCAA CATCCAGTTC ATCTTCCAGG ACCCGTTCGC CTCGCTCGAT
CCGCGCGTGA CCGTGGGCTT CTCGATCATG GAGCCGCTGC TCATCCACAA CATCGCCAAG
GGCGCCGAGG CGCAGCAGCG CGTCGACTGG CTGCTGCAGA AGGTCGGCCT GCCGCCCGAG
GTGGCGCAGC GCTATCCGCA CGAGTTCTCG GGCGGCCAGC GCCAGCGCAT CGCCATCGCA
CGCGCCCTCG CGCTCAACCC CAAGGTGGTG GTGGCCGACG AATCGGTGTC GGCGCTGGAC
GTATCGATCC AGGCGCAGAT CGTCAACCTC ATGCTCGACC TGCAGCGCGA ACTGGGCGTG
GCCTTTCTCT TCATCTCGCA CGACATGGCG GTGGTGGAAC GCATCAGCCA CCGCGTGGCC
GTGATGTACC TCGGCCAGAT CGTCGAGATC GGCCCGCGCC GCGCCGTGTT CGAAGCGCCG
CAGCACGCCT ACACCCGCAA GCTGATGGCC GCGGTTCCGG TGGCCGACCC GTCGCGCCGC
CACAAGCCGC GCGCGCTGCT CGAAGGCGAG ATCCCGAGCC CGATCCGCGC CGTGGGCGAC
GAGCCCGACG TGCCGCCGCT GGTGCAGGTG GCGCCCGGCC ACTTCGTGGC ACGGCATGCC
ATCGGCGGCG CCTTCTGA
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| Protein sequence | MSSPSLALPD GRVLAVDDLT VRFSTSERTV DAVKNLSFHV DHGETLAVVG ESGSGKSVTS
LALMRLVEHG GGRILGGRMA FRRRNGEVLD LAQARDTEMR NIRGADIAMI FQEPMTSLNP
VFTAGEQIAE AIRIHQGKNN AAARAEALRM LELVRIPEAR NVLDRFPHQL SGGMRQRVMI
AMALSCKPQL LIADEPTTAL DVTIQAQILQ LIRELQKEMR MGVLFITHDM GVVAEIADRV
LVMYRGDKVE AGSSDTVFAS PQHPYTKALL SAVPKLGAMQ GTDLPAKFEL LRTEGTPETV
PSTHTTPQTT VREGAGPILR VRDLVTRFEV RSGLFGRVKR RVHAVEKISF DLYPGETLAL
VGESGCGKST TGRSLLRLVE SQSGAIEFGG QNIRELPTRE LQALRRNIQF IFQDPFASLD
PRVTVGFSIM EPLLIHNIAK GAEAQQRVDW LLQKVGLPPE VAQRYPHEFS GGQRQRIAIA
RALALNPKVV VADESVSALD VSIQAQIVNL MLDLQRELGV AFLFISHDMA VVERISHRVA
VMYLGQIVEI GPRRAVFEAP QHAYTRKLMA AVPVADPSRR HKPRALLEGE IPSPIRAVGD
EPDVPPLVQV APGHFVARHA IGGAF
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