| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2988 |
|---|
| Symbol | |
|---|
| ID | 7972264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 3145576 |
|---|
| End bp | 3146304 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644793573 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_002944874 |
|---|
| Protein GI | 239815964 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.410423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACTG CCAAACGCGT GCTGATCGTC GAGGACGACG CCCACATCGC CGAACTGCTG
CGCATGCACC TGCGCGACGA AGGCTATGCG ATCGAACACG CCGCGGACGG CCACACGGGC
CTGCGCGAAC TGGAGCGCGG CCATTGGGAC GCGCTGGTGC TCGACCTGAT GCTGCCCGGC
GTGGACGGCC TCGAGATCTG CCGCCGCGCC CGCGCCATGG CGCGCTACAC GCCGATCATC
ATCATCAGCG CACGGTCGAG CGAGGTGCAC CGCATCCTTG GCCTGGAGCT GGGCGCCGAC
GACTACCTGG CCAAGCCCTT CTCGGTGCTG GAACTCGTGG CGCGCGTCAA GGCGCTGCTG
CGGCGCACCG ATGCGCTGGC GCGCAATGCC CGCCTGGAGT CGGGCAGCCT CACGCTGGGC
AACCTGGACA TCGATCCTGT GGCGCGCGAG GTGCGCGTCG ATGCCAGGCT GATCGAGCTC
ACGCCGCGCG AGTTCGACCT GCTGTACTTC TTTGCGCGCC ATCCGGGCAA GGTGTTCTCG
CGGCTCGACC TGCTCAACCA GGTCTGGGGC TACCAGCACG ACGGCTACGA GCACACGGTC
AACACGCACA TCAACCGGCT GCGCACCAAG GTCGAGGCCG ATCCGGCCGA GCCGCGGCGC
ATCCTGACCG TCTGGGGGCG GGGCTACAAG CTCTCGCCCA CCGGAGCCGG CGAGGAAGGG
GGGGCGTGA
|
|---|
| Protein sequence | MDTAKRVLIV EDDAHIAELL RMHLRDEGYA IEHAADGHTG LRELERGHWD ALVLDLMLPG
VDGLEICRRA RAMARYTPII IISARSSEVH RILGLELGAD DYLAKPFSVL ELVARVKALL
RRTDALARNA RLESGSLTLG NLDIDPVARE VRVDARLIEL TPREFDLLYF FARHPGKVFS
RLDLLNQVWG YQHDGYEHTV NTHINRLRTK VEADPAEPRR ILTVWGRGYK LSPTGAGEEG
GA
|
|---|
| |