Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2950 |
Symbol | |
ID | 7972226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 3107504 |
End bp | 3109588 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793535 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_002944836 |
Protein GI | 239815926 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.191754 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACGC GCGACGAAGC GGCACGCGAA GCCGCCGCAC TGAGCGAACA GCTCCACAAG CACGCCCATC TCTACTACGT GCTCGATGCG CCCGAGCTGC CCGACGCCGA GTACGACCGG CTGTTCCAGC GGCTGCAGGC GCTGGAAGCC GAATACCCCG AACTGCGCAC GCCCGATTCG CCCACGCAGC GCGTCGGCGG CAAGGTGCTC GAAGGCTTCG TGAAGGTGCG CCACAAGGTG CCGATGCTGT CGATCCGCAC CGAGACCGAC ATCTCGCCCG GCGGCGCCAG CGCCTTCGAT GCCCGCGTGC GCAAGGAACT GGGCCTGGCC GAGGACGGGC CGCAGGTCGA GTACGTCTGC GAACTCAAGT TCGACGGCCT GGCCATGAAC CTGCGCTATG AGAACGGCGT GCTGGTGCAG GCCGCGACGC GCGGCGATGG CGAGGTCGGC GAGGAGGTCA CGCAGAACAT CCGCACGGTG CGCGAGATTC CGCTGCGGCT CAATGGCAAG GCGCCGCCCG TGGTCGAGGT GCGCGGCGAG ATCTACATGA AGCGCGCCGA CTTCGAGGCG CTCAACGAGC GCCAGCGCGA GAAGATCGCG GCCGGGCAGA AGAACGAGAA GGTCTTCGTC AATCCGCGCA ATGCCGCGGC CGGCGCGGTG CGCCAGCTCG ATCCGGCCAT TGCGGCGGCG CGGCCGCTGA GCTTTTTTGC CTACGGCCTC GGCGAGGTCA CGCCGGCCAG CGAAGGCGGG CCGGAATTTC CGACCCAGTT CGACTGGCTG CAGCAGTTCC ACGCCTGGGG CTTTCCGGTG GCCACGCAGA CCGCACGCGC GACCGGTGCC ATCGAACTGA TCGCCTTCCA CGAGAACATC GGGCGCCAGC GCGATGCCTT GCCCTACGAC ATCGACGGCG TGGTCTACAA GGTCGACAGC ATCGAGCTGC AGCGGCGGCT GGGCTTCGTC TCGCGCGAAC CGCGCTGGGC CGTGGCACAC AAGTACCCGG CGCAGGAGCA GATCACCGAG GTGCTGGGCA TCGAGGTGCA GGTCGGGCGT ACCGGCAAGC TCACGCCGGT GGCCAAGCTC GCGCCGGTCT TCGTGGGCGG CGTGACCGTC ACCAACGCCA CGCTGCACAA CGAGGACGAG GCGCGCCGCA AGGACGTGCG CGTGGGCGAC AAGGTGATCG TGCGGCGGGC CGGCGACGTG ATCCCCGAAG TGGTCGGCGT GGTGCCCGAA AGCCTCGCCA GGCCCGAGGG CGAGCGAGGC CTGCTCTTCA CCATGCCGCA CCAGTGCCCG GTGTGCGGAT CGGAAGCGCT GCGCGAAGAG GGCGAAGTCG ACTACCGCTG CACCGGCGGC CTGTTCTGCG CGGCCCAGCG CAAGGAAGCC ATCCTGCACT TTGCGGCGCG CCGCGCGGTC GACATCGACG GGCTCGGCGA CAAGCTGGTC GAGCAGCTGG TCGATGCCAA CCTGATCCGC ACCTTGCCCG ACCTCTACAA GCTCGGATTC GCCACGCTGG CGGGGCTGGA CCGCATGGCC GACAAGTCGG CCAAGAACCT CGTCGATGCG CTCGAGGCGT CGAAGAAGAC CACGCTGCCG CGCTTCCTGT TCGGCCTGGG CATACGGCAC GTGGGCGAGA GCACGGCCAA GGACCTGTCC AAGCACTTCG GCAAGCTCGA CGCGATCATG GATGCGAGCG AGGAGCAGTT GCTGGAAGTC AACGACGTGG GCCCGGTCGT CGCGCAAAGC CTGCGCACCT TCTTCGACCA GCCGCACAAC CGCGAGGTGG TCGAGCAGCT GCGCGCCTGC GGGCTGACCT GGGAGGAGGG CGAACCCGCC GCCCGGGCGC CCAAGCCGCT GGCGGGGCTG ACCTTCGTGA TTACCGGCAC CCTTCCTACG CTGAGCCGCG ACGAAGCCAA GGACAAACTG GAAGCAGCCG GCGCCAAGGT GGCGGGTTCC GTCAGCAAGA AGACCAGCTA CCTGGTGGCC GGCGAAGAGG CCGGCAGCAA GCTGGACAAG GCGCGCGAGA TCGGCGTGGA GGTGATCGAC GAGGCGCGTA TGCTGGAGCT GCTCGCCGGC GGTGCGCCGG GTTGA
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Protein sequence | MTTRDEAARE AAALSEQLHK HAHLYYVLDA PELPDAEYDR LFQRLQALEA EYPELRTPDS PTQRVGGKVL EGFVKVRHKV PMLSIRTETD ISPGGASAFD ARVRKELGLA EDGPQVEYVC ELKFDGLAMN LRYENGVLVQ AATRGDGEVG EEVTQNIRTV REIPLRLNGK APPVVEVRGE IYMKRADFEA LNERQREKIA AGQKNEKVFV NPRNAAAGAV RQLDPAIAAA RPLSFFAYGL GEVTPASEGG PEFPTQFDWL QQFHAWGFPV ATQTARATGA IELIAFHENI GRQRDALPYD IDGVVYKVDS IELQRRLGFV SREPRWAVAH KYPAQEQITE VLGIEVQVGR TGKLTPVAKL APVFVGGVTV TNATLHNEDE ARRKDVRVGD KVIVRRAGDV IPEVVGVVPE SLARPEGERG LLFTMPHQCP VCGSEALREE GEVDYRCTGG LFCAAQRKEA ILHFAARRAV DIDGLGDKLV EQLVDANLIR TLPDLYKLGF ATLAGLDRMA DKSAKNLVDA LEASKKTTLP RFLFGLGIRH VGESTAKDLS KHFGKLDAIM DASEEQLLEV NDVGPVVAQS LRTFFDQPHN REVVEQLRAC GLTWEEGEPA ARAPKPLAGL TFVITGTLPT LSRDEAKDKL EAAGAKVAGS VSKKTSYLVA GEEAGSKLDK AREIGVEVID EARMLELLAG GAPG
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