| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2930 |
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| Symbol | |
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| ID | 7972206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 3081777 |
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| End bp | 3083015 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644793515 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002944816 |
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| Protein GI | 239815906 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0288888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGTTCG CTCTGAAAAT CGCTACCGCC TCCATCCTTG CAGCGAGCGC CGCCGGCGCG
CTGGCCCAGA AGGGCGAAAC CGTGAAGATC GCCTGGCTCG ACCCGCTGTC GGGCCTGATG
GCAGCCGTTG GCACCAACCA GCTCAAGACC TTCCAGTTCC TGGCCGAAGA ATTCAACAAG
AAGAACGCGG CCGGCGTGAA GTTCGAGGTC ATTGCCATCG ACAACAAGCT GAGCCCGCAG
GAGACCACCA GCGCGCTGCG CTCGGCCATG GACCAGGGCG CACGCTACGT GGTGCAGGGC
AACGGCTCCG GCCCGGCGCT GGCCATCATC GACGCGCTCG AGAAGCATAA CGCCCGCAAC
CCGGGCAAGG AAGTGCTCTA CATCAACTAC GCGGCGGTTG ACCCCGACCT CACCAACAGC
AAGTGCAGCT ACTGGCACTT CCGCCTCGAT GCCGACACCT CCATGAAGAT GGAAGCGCTG
ACCGCCTTCA TGAAGGAGCA GCCCGACATC AAGAAGGTCT ACCTCATCAA CCAGAACTAC
TCGCACGGCC AGCAGGTCTC CAAGTTCGCC AAGCAGAACC TCAAGGACAA GCGGCCCGAT
GTCGAGATCG TGGGCGACGA CCTGCATCCG CTGGCCCAGG TGCGCGACTT CTCGCCCTAC
ATCGCCAAGA TCAAGGCTTC GGGTGCCGAC ACCGTCATCA CCGGCAACTG GGGTTCCGAC
CTCGCGCTGC TCATCAAGTC GGCCAACGAC TCGGGCCTGA ACGTCAAGTT CTACACCTAC
TACGCCGTGA CCAACGGCAC GCCCACCGCC ATGGGCGCGG CTTCGGACGG CAAGGTCTAC
CAGGTGGGCT ACAGCCACTA CAACGCGCCC GGCCCGGTGC AGCCGCTGAT GAACGAGTTC
AAGAAGAAGT TCAACGACGA CATGTACACC ACCGACATCT ACACGGTGTA CGCCATGCTC
AGCGAAGCCT TCGTGCGCAC CAAGTCGACC GAGCCCGTCA AGGTGGCGGC CGCGATGGAA
GGCATGAAGT TCAAGAGCTT CAACGGCGAT GTCGAGATGC GCAAGTCCGA CCACCAGCTG
CAGCAGGGCC TGTGGATCAC GCGCTGGCAG AAGGCCGACG CCAAGAACCC CTACAGCCCG
GAGAACACCG GCTACACGCT GGCGCCCGTC AAGTTCTACG AAGCCTACGT TGCGAGCACG
CCCACCTCGT GCCAGATGAA GCGGCCCAAC AACTCCTGA
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| Protein sequence | MKFALKIATA SILAASAAGA LAQKGETVKI AWLDPLSGLM AAVGTNQLKT FQFLAEEFNK
KNAAGVKFEV IAIDNKLSPQ ETTSALRSAM DQGARYVVQG NGSGPALAII DALEKHNARN
PGKEVLYINY AAVDPDLTNS KCSYWHFRLD ADTSMKMEAL TAFMKEQPDI KKVYLINQNY
SHGQQVSKFA KQNLKDKRPD VEIVGDDLHP LAQVRDFSPY IAKIKASGAD TVITGNWGSD
LALLIKSAND SGLNVKFYTY YAVTNGTPTA MGAASDGKVY QVGYSHYNAP GPVQPLMNEF
KKKFNDDMYT TDIYTVYAML SEAFVRTKST EPVKVAAAME GMKFKSFNGD VEMRKSDHQL
QQGLWITRWQ KADAKNPYSP ENTGYTLAPV KFYEAYVAST PTSCQMKRPN NS
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