Gene Vapar_2905 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2905 
Symbol 
ID7970794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp3054319 
End bp3055014 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content67% 
IMG OID644793490 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002944791 
Protein GI239815881 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.839759 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGCAG ACATCATCGA AATCTCGCGC CTTGCGCTGC ACGACCAGGT CGCGTCGCGC 
CTGCGCACGA TGCTGGTCGA AGGGCACATC GCGCCCGGCG CCAAGCTCAA CGAGCGCGAG 
CTGTGCCTTC AATTGCGCGT CTCGCGCACG CCGCTGCGCG AGGCCATCAA GCTGCTCGCG 
GCCGAAGGGC TGGTCGACCT GCTGCCCAAC CGCGGCGCGG TGGCGGTGAA GCTCACCGAG 
GCCGACGTGC TCAACACCTT CGAGGTGCTG GCCATGCTCG AAGGCATGTC GGGCGAGCTC 
GCGGCCAAGC GCATCACCGA CGAGGAACTG GCCGAGGTGC GCGCGCTGCA CTACGAAATG 
ATGGCCTGCT TCGCGCGGCG CGATCTCTCG GGCTACTACC GCCTCAACGC GCGCATCCAC 
ACCGCCATCA ACGAGGCCGC GGGCAACCCG GTGCTGTCCA GCACCTACCG CTCCATCAAT 
GCCCGCGTGC AGTCGCTGCG CTTTCGCACC AACCAGAACG ATGCCAAGTG GAAGCACGCG 
GTCGAGGAGC ACGAGCAGAT GATCGTTGCG CTGGCCGCGC GCGACGCCGC CGGCCTGCGC 
AAGGTGCTCA TCTCCCACGT GATGCGCAAG CGCGACACGG TGCTCGAGCT GATGCGCACC 
GGCCAGATCT ATCCCCAGGC CCACAAGGCG AGCTGA
 
Protein sequence
MTADIIEISR LALHDQVASR LRTMLVEGHI APGAKLNERE LCLQLRVSRT PLREAIKLLA 
AEGLVDLLPN RGAVAVKLTE ADVLNTFEVL AMLEGMSGEL AAKRITDEEL AEVRALHYEM 
MACFARRDLS GYYRLNARIH TAINEAAGNP VLSSTYRSIN ARVQSLRFRT NQNDAKWKHA 
VEEHEQMIVA LAARDAAGLR KVLISHVMRK RDTVLELMRT GQIYPQAHKA S