Gene Vapar_2825 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2825 
Symbol 
ID7971038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp2970551 
End bp2971243 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content76% 
IMG OID644793410 
Producthypothetical protein 
Protein accessionYP_002944711 
Protein GI239815801 
COG category[S] Function unknown 
COG ID[COG2836] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.00604868 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGACCG CGTGGGCCGC CTTGCTGATG GGCCTGGCAG GCGGCCCGCA CTGCGTGGCC 
ATGTGCGGCG CGGCCTCGGC CGCGGTGATC CGCATCGTGC CGGCGGCGGC GGGCGGCCAT 
GCCAACACTG CCCTCGCGGC GCCGGCGGCC TTTCATGTGG GCCGCATCGC AAGCTACGCC 
GCCGCGGGCG CCATTGCGGC CGCAAGCGTG GACAGCCTGG CCCAGGCCAG CGCGCAGGTC 
GCCGCGCTCA GGCCGCTGTG GATGCTGCTG CATGTGTTCG TGTTCGCATG GGGCGCCGTG 
CTGGCCGTCG CAGGCCGGCA GCCGGTATGG GCGCAGCGCG TCGGCCGAAC GCTCGAAGCG 
CGCCTTCGCC CATTGGCCGG GGGCACGCCG CTGGGGCTGC TGGCCGTGGG CGCACTCTGG 
GTGGCCATGC CTTGCGGGCT GCTCTACTCG GCGCTGCTGC TGGCCAGCCT GGGCAACGGG 
CCGCTGCAGG GCGGCCTCGC GATGACGTCG TTCGCCATCG GCAGCGGACT GTCGCTGGTG 
CTGGCGCCAT GGCTCTGGCA GCGGCTGCGC TGGGGCGGCA CCGGCCGGCT CCAGGCCTGG 
GGCGCGCGCC TGGCGGGCGT GCTGCTGGCG GCGGTGGCGC TGCAGGCGCT CTGGGCGGAC 
CTCGGCCACC GGATCGCCGA CTGGTGCCGC TGA
 
Protein sequence
MQTAWAALLM GLAGGPHCVA MCGAASAAVI RIVPAAAGGH ANTALAAPAA FHVGRIASYA 
AAGAIAAASV DSLAQASAQV AALRPLWMLL HVFVFAWGAV LAVAGRQPVW AQRVGRTLEA 
RLRPLAGGTP LGLLAVGALW VAMPCGLLYS ALLLASLGNG PLQGGLAMTS FAIGSGLSLV 
LAPWLWQRLR WGGTGRLQAW GARLAGVLLA AVALQALWAD LGHRIADWCR