Gene Vapar_2824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2824 
Symbol 
ID7971037 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2969136 
End bp2970548 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content70% 
IMG OID644793409 
Productoxygen-independent coproporphyrinogen III oxidase 
Protein accessionYP_002944710 
Protein GI239815800 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00538] oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0116483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACAGC CTTGCACCGC CTCCACGGGG CTTCCAGATG CCGCCCCCTT GTCGGCTGCC 
GTGCTGCGGC AGTTCGACGT TGCGGGCCCG CGCTACACCT CGTATCCGAC GGCCGACCGG
TTCATCGAAG CCTTCGGTGC GGACGAGTAC GCGGCGGCGC TGCGCGAGCG GCGCGATGCG
GGCGCTTCGG CGGCGCCGCT GTCGCTCTAC GTGCACATTC CGTTCTGCGA ATCGCTGTGC
TACTACTGCG CATGCAACAA GGTGGTGACG CGGCACCACG AGCGGGCCAC CCAGTACCTG
GCCTACCTGG CGCGCGAGAC CCGGCTGCAG GCCGCGCAGC TGGGCCGCCG CGCCGCCGTG
AGCCAGTTGC ACCTGGGCGG CGGCACGCCC ACCTTCCTGA GCGACGCGGA GCTGGGCGAA
CTGCTGGCCA TGCTGCGCGA ATCCTTCGAC TTCGTCCCCG GCGGCGAATG GTCCATCGAG
ATCGATCCGC GCACCGTCGA TGCCGCGCGG CTCGCCAGCC TGGCGACGCT GGGTTTCAAC
CGGCTGAGCT TCGGCGTGCA GGACTTCGAC CCCGAGGTGC AGAAGGCCGT GCACCGCATC
CAGCCCGCGC ACCAGGTGTT CGGCTTGATG GCCGATGCGC GCGCGCTGGG ATTCAAGTCG
ATCAACGCCG ACCTGATCTA CGGGCTGCCG CGCCAGAACG ACAGGTCCTT CGAGCGCACC
ATGGCCCAGG TCTGCGAGCT TCGGCCCGAC CGCATCGCGC TCTACGCCTA TGCGCACCTG
CCCGAACGCT TCAAGCCGCA GCGGCGCATT GCCGCGGACG AACTGCCCGA CGCCGCCGCG
CGGGTGCGAA TGCTCTCGCG CGCCATTGCC ACGCTCAGCG ATGCCGGCTA CGTCTACATC
GGCATGGACC ACTTCGCGCT GCCGGACGAT CCGCTGGCGG TGGCCAAGCG GCAGGGGCGG
CTGCAGCGCG ATTTCCAGGG CTACAGCACG CAGCCGGAGG GCGACCTGGT GGCGCTCGGC
GTTTCCGCCA TCGGCCGCAT CGGCGCCAGC TACAGCCAGA ACGCCAAGAC GCTGGACACC
TACTACGACC TGCTCGGCCA GGGCCGCCTG CCCGTGGTCC GCGGCCTTGC GCTGTCGCGC
GACGACGTGC TGCGGCGCGC GGTCATCATG GCGGTGATGT GCAGGGGGCG GGTGGTGTTC
GACGCCATCG GCGAGGCGCA CCGCATCGAC TTCCGGCACT ACTTCGCGGC CGAGTTCGCG
GCGCTCGGGC CGCTTGTGGC CCAGGGACTG GTGCGGGTCA GCGACCACGA CATCGAGGTC
ACGGCCGAGG GCTGGTTCGT GGTGCGCGCC ATCGCCATGG TGTTCGACCG CTATTGCCGC
GAGAACCGCA CGCGCTTTTC GCGCGTGGTC TGA
 
Protein sequence
MTQPCTASTG LPDAAPLSAA VLRQFDVAGP RYTSYPTADR FIEAFGADEY AAALRERRDA 
GASAAPLSLY VHIPFCESLC YYCACNKVVT RHHERATQYL AYLARETRLQ AAQLGRRAAV
SQLHLGGGTP TFLSDAELGE LLAMLRESFD FVPGGEWSIE IDPRTVDAAR LASLATLGFN
RLSFGVQDFD PEVQKAVHRI QPAHQVFGLM ADARALGFKS INADLIYGLP RQNDRSFERT
MAQVCELRPD RIALYAYAHL PERFKPQRRI AADELPDAAA RVRMLSRAIA TLSDAGYVYI
GMDHFALPDD PLAVAKRQGR LQRDFQGYST QPEGDLVALG VSAIGRIGAS YSQNAKTLDT
YYDLLGQGRL PVVRGLALSR DDVLRRAVIM AVMCRGRVVF DAIGEAHRID FRHYFAAEFA
ALGPLVAQGL VRVSDHDIEV TAEGWFVVRA IAMVFDRYCR ENRTRFSRVV