| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2786 |
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| Symbol | |
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| ID | 7970999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2932895 |
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| End bp | 2933467 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793372 |
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| Product | intradiol ring-cleavage dioxygenase |
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| Protein accession | YP_002944673 |
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| Protein GI | 239815763 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.228941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCGC TCTGGCTGGG CGCCCGCGCA CAGCCGGCGG CAAGCCGGCT CGCCACCCCT
TCGCAGACCG AGGGACCCTT CTACCCCGTG CGCCTGCCGC AGGATTCCGA TGGCGATCTG
CTGCGCAACG GCACGCTGGA CTACCGCAGC GGCCAGCCGG CCTGGGTCGA CGGCACGGTG
ACCGACCTGA GCGGCAGGCC GCTGCGCGGC GCGCAGGTCG AGATCTGGCA GTGCGATCAG
AACGGCCACT ACCACCACCC CGGCGACGGC GACCGCGCCG ACGCCGCCTT CCAGGGCTTC
GGCCGCGTCA CGGTCGGCGA AGACGGCAGC TACCGCTTCC GCACCATCCG CCCGGTGCCC
TACAGCGGCC GCACGCCGCA CATCCACGTC AAGGTGAAGC TCGGCACGCG CGAGCTGCTG
ACTACGCAGC TCTACGTGGC CGGCGATCCG GGCAATGCGC GCGACTACCT CTGGCGCAAT
CTTCCGCAGG CCGCGAGGGA GGCCGTCACA GTGCCCTTCG AGCGCGGGCC GGATGGCCTG
CAGGCGCGCT TTCCGATTGC CGTTGCGGCC TGA
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| Protein sequence | MPALWLGARA QPAASRLATP SQTEGPFYPV RLPQDSDGDL LRNGTLDYRS GQPAWVDGTV
TDLSGRPLRG AQVEIWQCDQ NGHYHHPGDG DRADAAFQGF GRVTVGEDGS YRFRTIRPVP
YSGRTPHIHV KVKLGTRELL TTQLYVAGDP GNARDYLWRN LPQAAREAVT VPFERGPDGL
QARFPIAVAA
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