Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2754 |
Symbol | |
ID | 7970967 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2904988 |
End bp | 2905803 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793341 |
Product | putative transmembrane anti-sigma factor |
Protein accession | YP_002944642 |
Protein GI | 239815732 |
COG category | [K] Transcription |
COG ID | [COG5662] Predicted transmembrane transcriptional regulator (anti-sigma factor) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCGCC CTGCCCCGCC CCCCACCGAC GACGAGTTGC ATGCGCTCAT CGATGGCCAG TTGGCACCGG AACGCCGCAC CGAGCTCGAG GACGCCGTCG CGCACGATCC GGCCCTTGCG GCGCGGGTGG CGGCCTGGCG CACCCAGCGC GACGCACTGC GCCGGCTGCA TGGAGAGCTG CTGGTAGAGC CCGTGCCCGC GCCCCTGATG AACGCGCTCG ATCGCAGCCA GGCCCGGCGA GGCCATTGGA TGCGATGGGG CGGCATGGCG GCCGGCGTGC TGATCGCCTT TGCCGCCGGC TGGCTCGGCA ATGCCCAGTG GTCGATGCAG CGCGCCGCTT CGGCCCAGTT GGCCAGGGCG CCTGCGATGC GCGAATTCGT GCACGACGCG TCCATTGCCC ACGCCGTCTA TGCGCCGGAA AAAAGGCACC CGGTCGAGGT GGCTGCCAGC GAGCAGCAGC ACCTCGTGCA GTGGCTGTCC AAGCGCCTGG ACAGGCCGCT CAAGGTGCCG GACCTGACCG CCATGGGCTA CACGCTCGTC GGCGGCCGCC TCTTGCCCGG GGAAAGCGGC GCGCGCGCCC AGTTCATGTT CGAGGACGCC GCCGGCGAAC GCATCACGCT CTACATCGGC ACCCTCGACA GCCAGGCCGC CGCCGGCACC GCCGCATCGC GCGAAACAGC CTTCCGTTTC GCGTCCGAAG GACCGGTGCC CAGCTTCTAT TGGATCGACC AGGGCTTCGG CTATGCCGTT GCCGGCAAGC TACCGCGTGA AGTTTTGCTG AAACTCGCGA CGCTCGCCTA CCGCGATTTG TCGTGA
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Protein sequence | MNRPAPPPTD DELHALIDGQ LAPERRTELE DAVAHDPALA ARVAAWRTQR DALRRLHGEL LVEPVPAPLM NALDRSQARR GHWMRWGGMA AGVLIAFAAG WLGNAQWSMQ RAASAQLARA PAMREFVHDA SIAHAVYAPE KRHPVEVAAS EQQHLVQWLS KRLDRPLKVP DLTAMGYTLV GGRLLPGESG ARAQFMFEDA AGERITLYIG TLDSQAAAGT AASRETAFRF ASEGPVPSFY WIDQGFGYAV AGKLPREVLL KLATLAYRDL S
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