| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2691 |
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| Symbol | |
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| ID | 7972290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2833535 |
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| End bp | 2835256 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644793279 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_002944582 |
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| Protein GI | 239815672 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0993753 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTGGT TCGGCGGCTC GCGCCACTGG TGGGCCGTCG GGCTCATCGG CGCCCTGCTG
GCGGCCGTCA CCGAGCCCTT GATGGCGGCC CTGCTGAAGC CGCTGCTCGA CCGCGGCTTC
AACCGCGGCC AGCTCGCGCT GTGGATCGTG CCGGCGGCCG TGCTGCTGCT GTTCGCGGTG
CGTGGCATCG CGCAGTTCAT TTCCCAATAT GCGCTCTCGC GCATCGCCAA CGAAGGCATG
CAGCGGCTGC GCCGCGTGCT GTTCCAGCGC CTGCTGGCGG CCGAGCTGGC GCTGTTCTCG
CGCCAGTCGG CCAGCGCGCT TTCCAACACC GTGGTGTACG AGGTGCAGAC CGGCTCCATG
CTGCTGGTGC AGGCCCTGCT CGGGCTCTCG CGCGACGGCT TCACGCTGGT GGCGCTGCTC
GCCTACCTGG TCTATCTGAA CTGGAAGCTC ACGCTCATCG TCGCCTTCCT GGTGCCGAGC
ATCTCGTGGA TCATGAAGGT GTTCTCCAAG CGCCTGTACC GCCTGACCCA GCAGGGCCAG
CAGGCCACCG ACGAACTCGC CTATGTGGTG GAAGAGAACG TGCTCGCGCA CCGCATGGTG
CGGCTGCACG GGGCCGAGGC GGCGCAGGGC GAGCGCTTCG AACAGCTGAG CCAGCGCCTG
AACCGCCTGG CCGTGAAATC GACCATTGCG CAGGCCGCCA CCACGCCGCT CACGCAGATG
ATGGCCGCGC TTGCACTGTC GGTGGTGGTG ATGATCGCGC TCTGGCAGAG CGGCGAACAG
GGCCTGACCG TGGGCGGCTT CGTTGCCTAC ATCACGGCCA TGCTGATGCT GATCGCGCCG
ATCCGCCGGC TGGCGGACAT GGCCGCGCCC ATCACGCGCG GCCTTGCAGC GCTCGAACGC
GGCCTGGTGC TGATCGACGA AGTGGCGCCA GAGCCGCAGG GCAGCTTCGC CATCGACCAT
GCGCAAGGCC GCATCGAACT GCGCGAGGCC AGGGTCAGCT ACCGCGGCGA GGACGAGGCC
CGCGCGCTCG ACGGCGTGAA CCTGATGATC GAGCCGGGTC AGGTGGTGGC CTTCGTCGGG
CCTTCGGGAT CCGGCAAGAC CACGCTGGTC AACCTGCTGC CGCGCTTCGT GCTGCCGAGC
GGCGGCCAGG TGCTGCTCGA CGGGCACGAC ACCAGCGAAT GGGAGCTCAA GAGCCTGCGC
GCGCAGTTCG CGATGGTGAG CCAGGACGTG GTGATGCTCA ACGACACGCT GGCCGCCAAC
GTGGCGCTGG GCGCCGCCGT CGATCGCGCT CGCGTGCAGC AGTGCATAGA AGCCGCCAAC
CTCGCCTCCC ACGTCGAAAG CCTGCCGCAG GGCATCGACA CGGTGCTCGG CCACAACGCC
ACGCAGCTTT CCGGCGGCCA GCGCCAGCGC CTGGCCATTG CACGCGCGCT CTACAAGAAC
GCGCCCATCC TGCTGCTCGA CGAGGCCACC TCGGCCCTCG ACACCGAATC GGAACGGCTG
GTGCAGGACG CCCTGCAGCG CCTGATGCAG AACCGCACCA CGCTGATCGT CGCCCACCGG
CTCTCGACCA TCCAGCATGC CGACCGCATC ATCGTGATGG AGCAGGGCCG CATCGCCGAG
CAAGGCAGCC ACGCGCAGCT GATGGCGCTG GACGGCCTCT ATGCCCGGCT GCAGACGCTG
GCGGTGCGCA GCGCGACGCC GGGCCAGGAC CCGACGCTCT GA
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| Protein sequence | MTWFGGSRHW WAVGLIGALL AAVTEPLMAA LLKPLLDRGF NRGQLALWIV PAAVLLLFAV
RGIAQFISQY ALSRIANEGM QRLRRVLFQR LLAAELALFS RQSASALSNT VVYEVQTGSM
LLVQALLGLS RDGFTLVALL AYLVYLNWKL TLIVAFLVPS ISWIMKVFSK RLYRLTQQGQ
QATDELAYVV EENVLAHRMV RLHGAEAAQG ERFEQLSQRL NRLAVKSTIA QAATTPLTQM
MAALALSVVV MIALWQSGEQ GLTVGGFVAY ITAMLMLIAP IRRLADMAAP ITRGLAALER
GLVLIDEVAP EPQGSFAIDH AQGRIELREA RVSYRGEDEA RALDGVNLMI EPGQVVAFVG
PSGSGKTTLV NLLPRFVLPS GGQVLLDGHD TSEWELKSLR AQFAMVSQDV VMLNDTLAAN
VALGAAVDRA RVQQCIEAAN LASHVESLPQ GIDTVLGHNA TQLSGGQRQR LAIARALYKN
APILLLDEAT SALDTESERL VQDALQRLMQ NRTTLIVAHR LSTIQHADRI IVMEQGRIAE
QGSHAQLMAL DGLYARLQTL AVRSATPGQD PTL
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