Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2685 |
Symbol | |
ID | 7972284 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2828720 |
End bp | 2829637 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793273 |
Product | Coproporphyrinogen oxidase |
Protein accession | YP_002944576 |
Protein GI | 239815666 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0408] Coproporphyrinogen III oxidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0507108 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACAGA CCAACCCGGC AGCGGTCGGC GACTACCTGC GCAAGCTGCA GCAGGAGATC GTCGCGGCCG TCGAGGCGGC CGATGGCGGT ACCTGCGTGC GCGATGCCTG GCAAAAGGAG CCTGGCGAGG CGCTGCAGGG CAGCGGCCTC ACCTGCATTC TGGAAGGCGG CGCGCTGTTC GAGCGCGCGG GCTGCGGCTT CTCGCAGGTG CGCGGCCCCA GGCTGCCGCC TTCGGCCACG CAGAACCGGC CCGAGCTCGC CGGCGCGCCC TTCGAGGCCA TGGGCGTTTC GCTGGTGTTC CATCCGCGCA ATCCCTACGT GCCCATCGTC CACATGAACG TGCGCATGCT GGCCGCGCTG CCCGAGGGCA AGGACCCGGT GTGCTGGTTC GGCGGCGGCA TGGACCTCAC GCCCTGCTAT GGCTTCGAGG ATGACGCGGT TCACTTCCAC ACCGTGTGCC GCGATGCGCT GGCCCCTTTC GGCGACGACA AGTACCCGCG CTTCAAGACC TGGTGCGACG AGTATTTCTT CCTCAAGCAC CGCAACGAGC AGCGCGGCAT CGGCGGCATC TTCTTCGACG ACTTCGCCGA GGGCGGATTC GACAACGGCT TTGCCTTGCT GCGCTCGGTG GGCAATGCCT TCCTGCCGGC CTACCTGCCC ATCATCGAGC GGCGCCGCGC CATGCCCTGG GGCGAGCGCG AGCGGGCGTT CCAGCTGTAC CGGCGCGGGC GCTACGTGGA GTTCAACCTC GTGTGGGACC GCGGCACGCA CTTCGGGCTG CAGTCGGGCG GGCGCACCGA ATCGATCCTG CTGTCGATGC CGCCGCTGGC CAGCTGGGCC TACCAGCAGC AGCCGGAGCC GGGCAGCCCC GAAGCCGCGC TGTACAGCGA CTTCATCGTG CGGCGCGACT GGTTGTGA
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Protein sequence | MQQTNPAAVG DYLRKLQQEI VAAVEAADGG TCVRDAWQKE PGEALQGSGL TCILEGGALF ERAGCGFSQV RGPRLPPSAT QNRPELAGAP FEAMGVSLVF HPRNPYVPIV HMNVRMLAAL PEGKDPVCWF GGGMDLTPCY GFEDDAVHFH TVCRDALAPF GDDKYPRFKT WCDEYFFLKH RNEQRGIGGI FFDDFAEGGF DNGFALLRSV GNAFLPAYLP IIERRRAMPW GERERAFQLY RRGRYVEFNL VWDRGTHFGL QSGGRTESIL LSMPPLASWA YQQQPEPGSP EAALYSDFIV RRDWL
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