Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2658 |
Symbol | |
ID | 7972420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2801924 |
End bp | 2803528 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644793246 |
Product | ABC transporter related |
Protein accession | YP_002944549 |
Protein GI | 239815639 |
COG category | [R] General function prediction only |
COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00395214 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAGCA CGACCGTCCT GCGCCTCCAG CGCATCACCA AGCGCTTCGG CACCCTCGTC GCGAACGACG CCATCTCCCT CGACCTGCAC GCGGGCGAAG TGCTCGCGCT GCTGGGCGAG AACGGCGCGG GCAAGTCGAC GCTCATGTCC ATCCTGTTCG GCCACTACGT CGCGGACGAA GGCGGCATCG AAGTCTTCGG CGCGCCGCTG CCGCCGGGCA ATCCCAAGGC GGCGCTGGCC GCGGGCGTGG GCATGGTGCA CCAGCACTTC ACGCTGGCCG ACAACCTCAG CGTGCTCGAC AACGTGATGA TGGGCACCGA ACCGCTCTGG CGCCCGGTCT CGCGCCGGGC GGCCGCACGC GCGAAGCTGC TCGAGGTGGC ACGGCGCTTC GGCCTGCCGG TGCAGCCCGA CGCGAAGATC GGCAGCCTCT CGGTCGGCGA ACGGCAGCGC GTCGAGATCC TGAAGGCGCT GTACCGCGGC GCGCGCATCC TGATCCTCGA CGAGCCGACC GCCGTGCTCA CGCCGCAGGA AAGCGAAGCG CTGTTCGCCA CGCTCGCGCA GATGGTGGCG CAGGGCCTGT CGGTGATCTT CATCAGCCAC AAGCTGGGCG AGGTGCTGCG CGTGTCGCAG CGCATCGCGG TGCTGCGCGG CGGCAAGCTG GTGGCCGAGG CGCGCACCGC CGAAACCACG CAGGCGCAGC TCGCGCTGTG GATGGTCGGG CATGCCGTGG AGGCGCCGCA GCGCCGGCCC GCCAGGTCGG TGGGCGACGC GGTCTGCGTG CTCGACCATG TGAGCACCGC GTCGGACAAG GACCAGGCGC AGAACCGGCT GCGCGAGGTG TCGCTCACGC TGCGCGCCGG CGAAATCACC GCCATCGCGG GCGTCTCGGG CAACGGCCAG GTGGCGCTGG CCGAACTGCT GTGCGGCACG CGCCGCGCCA CCTCGGGCAC GGCCCTGCTG ATGGGCCGCG CGCTGCCGCC CTCGCCCGCA CGGCTGGTGC AGCGCGGCGT CGCGCGCATT CCCGAGGACC GGCACGCGGT CGGCGTGGTC GGCGACCTGC CGGTGTGGGA GAACGCGGTG TCGGAACGGC TGCGCAGCCC CGTCTTCTCG CGCTGGTCGT GGTTCGTGCG GCGTGCGGCC GCGCGGCTGC ATGCAGGGCG CATCGAAAAG GCGTTCGACG TGCGCGGCGC GGGGCTGATG GCGCCGGCCC GTTCGCTTTC GGGCGGCAAC ATGCAGAAGC TGATCCTCGG GCGCGCGCTG CTGGCGCCCG AGCAGGACGA AGAAGACCCG GACAACAGGA AATACCCGAC GCGTGCGCCG CGCCTGATCG TTGCGCACCA GCCGACCTGG GGCCTGGACA TCGGCGCCGT CGCCTATGTG CAGCAGCAAC TCATTGCCGC GCGCGATGCG GGTGCGGCGG TGCTGGTGAT TTCCGACGAC CTCGACGAGG TGCTCGCGCT CGGCGATCGC GTGGCCGTGA TGCACGGCGG CCACCTCGGC GAAGCGCGCC CGGCCGCGGC TTGGACGCGC GAAGCCATCG GGCTGGCGAT GGCCGGCGCG GCGGCGCAGC AGCAGCAGCA GCAGCGCGCA GGGACTACGC CATGA
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Protein sequence | MNSTTVLRLQ RITKRFGTLV ANDAISLDLH AGEVLALLGE NGAGKSTLMS ILFGHYVADE GGIEVFGAPL PPGNPKAALA AGVGMVHQHF TLADNLSVLD NVMMGTEPLW RPVSRRAAAR AKLLEVARRF GLPVQPDAKI GSLSVGERQR VEILKALYRG ARILILDEPT AVLTPQESEA LFATLAQMVA QGLSVIFISH KLGEVLRVSQ RIAVLRGGKL VAEARTAETT QAQLALWMVG HAVEAPQRRP ARSVGDAVCV LDHVSTASDK DQAQNRLREV SLTLRAGEIT AIAGVSGNGQ VALAELLCGT RRATSGTALL MGRALPPSPA RLVQRGVARI PEDRHAVGVV GDLPVWENAV SERLRSPVFS RWSWFVRRAA ARLHAGRIEK AFDVRGAGLM APARSLSGGN MQKLILGRAL LAPEQDEEDP DNRKYPTRAP RLIVAHQPTW GLDIGAVAYV QQQLIAARDA GAAVLVISDD LDEVLALGDR VAVMHGGHLG EARPAAAWTR EAIGLAMAGA AAQQQQQQRA GTTP
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