| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2572 |
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| Symbol | |
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| ID | 7970049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2714926 |
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| End bp | 2716113 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793159 |
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| Product | putative transcriptional regulator, GntR family |
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| Protein accession | YP_002944464 |
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| Protein GI | 239815554 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.774309 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTCG CTTCCCGCCT CGACAACGTC GAAACCTCCG CCATCCGCGA ACTCTTCAAG
CTGCTGGGCA AGCCCGGCAT CATCAGCTTT GCGGGCGGCT TCCCCGACAG CGCCATGTTC
GACGTGGAGG GCCTGAAGGA GGCGAGCCAG AAGGCGCTGA CCGAGGAGCC CGGCGGCGCG
CTGCAGTACG GCGCCACCGA AGGCTACGAG CCGCTGCGCA CGCAGCTTTC TGCCTTCATG
AAGACCAAGG GCGTCGACGT GGACCCGAGC GGCCTGATCG TCACCACCGG CAGCCAGCAG
GCGCTCGACC TGCTCGGCAA GACCATGATC TCGCCCGGCG ACAAGGTGAT CGTCGAGGGC
CCGACCTTCC TGGCCACCAT CCAGTGCTTC CGCCTCTACG GCGCGCAGCT CATCAGCGCG
CCCATCGACG CCAACGGCGT GAAGACCGAC GAGCTCGAAA AGCTCATCGC CGAGCACAAG
CCCAAGTTCG TCTACCTGAT TCCCACCTTC GGCAACCCGA GCGGCGCCAT GCTGAGTCTG
GAGCGCCGCA AGAAGGTGCT CGAGCTGGCG GTCAAGTACC AGACGCTGAT CGTCGAGGAC
GACCCCTACG GCGACCTCTA CTTCGGCGAA GCGCCGCCGC CTTCGATCCT GGCTTTGGCC
AAGGACGTGC CGGGCAGCCG CGAGCTGCTC GCGCACTGCG GCAGCCTGAG CAAGGTGCTG
AGCCCGGGCC TGCGCATCGG CTGGATGATC GCGCCGGCCG AACTGCTCGC CAAGGCCACG
ATGTGCAAGC AGTTCAGCGA TGCGCACACC AGCACCTTCT CGCAGGCCAC GGCCGCGCAG
TACCTCAAGA GCGGCCGCAT GCCGGCCACG CTGGCGCATG TGCGCGAGGT CTACGGGCAG
CGCGCGCAGG CCATGGGCGC GGCGCTCGAG CGCGAACTGG GCGATGCGGT GAGCTTCACG
CAGCCGCAGG GCGGCCTGTT CTTCTGGGCC CGCCTCACGG GCGCCAACGG CAAGCTGGCC
GATGCCAACG AATTGGCCAA GCGGGCCATC GAGAAGCTCG TGGCCTTCGT GCCCGGAGCG
CCGTTCTTTG CGGAGAAGCC CGATGTCGCA ACGCTGCGCC TGAGCTTTGC GACGGCCGAC
GTGGCCAAGA TCGAAGAGGG CGTGAAGCGC CTGGGCCAGG CCCTGTAG
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| Protein sequence | MQFASRLDNV ETSAIRELFK LLGKPGIISF AGGFPDSAMF DVEGLKEASQ KALTEEPGGA
LQYGATEGYE PLRTQLSAFM KTKGVDVDPS GLIVTTGSQQ ALDLLGKTMI SPGDKVIVEG
PTFLATIQCF RLYGAQLISA PIDANGVKTD ELEKLIAEHK PKFVYLIPTF GNPSGAMLSL
ERRKKVLELA VKYQTLIVED DPYGDLYFGE APPPSILALA KDVPGSRELL AHCGSLSKVL
SPGLRIGWMI APAELLAKAT MCKQFSDAHT STFSQATAAQ YLKSGRMPAT LAHVREVYGQ
RAQAMGAALE RELGDAVSFT QPQGGLFFWA RLTGANGKLA DANELAKRAI EKLVAFVPGA
PFFAEKPDVA TLRLSFATAD VAKIEEGVKR LGQAL
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