| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2563 |
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| Symbol | |
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| ID | 7970040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2703552 |
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| End bp | 2706827 |
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| Gene Length | 3276 bp |
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| Protein Length | 1091 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644793150 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_002944455 |
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| Protein GI | 239815545 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0179005 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCTCT CTAAATTCTT CATCGACCGG CCGATCTTTG CCGGCGTGCT GTCGCTATTG
ATCCTGATAG CCGGCCTGAT CGCGCTGCGC GGGCTGCCGA TCTCGGAGTA CCCGGAAGTT
GCGCCGCCCT CGGTGGTGGT GCGCGCCCAG TACCCGGGCG CCAACCCGAA GGTGATCGCC
GAAACCGTGG CCACGCCGCT CGAAGAGCAG ATCAACGGCG TCGAGGGCAT GCTCTACATG
GGCAGCCAGG CCACCACCGA CGGCGTGCTG ACGCTCACCG TCACCTTCCG CCTCGGTACC
GACCCGGACA AGGCGCAGCA GCTGGTGCAG AACCGCGTCT CGCAAGCCGA GCCGCGCCTG
CCGGAGGAAG TGCGCCGCCT CGGCATCACG ACCGTCAAGA GCGCGCCCGA CCTGACGATG
GTGGTCCACC TCGTCTCGCC GAACAACCGC TACGACATCA ACTACCTGCG CAACTACGCT
GTGTTGAACG TGAAAGACCC GCTCGCGCGC ATCGAAGGCG TGGGCCAGGT GCAGATCTTC
GGCGGCGGCG ACTACTCGAT GCGCGTCTGG CTCGACCCGC AGAAGGTCGC GCAGCGCGGC
CTCTCGGCGA GCGACGTGGT GGCTGCCATC CGCGGCCAGA ACGTGCAGGC CGCGGCCGGC
GTGGTCGGCG CTTCGCCGGG CCTGTCGGGC GTGGACATGC AGCTCTCGAT CAATGCGCAA
GGGCGCCTGC AGAGCGAGGA AGAGTTTGGC GACATCATCG TCAAGAGCGG CACCGACGGC
GCCGTGACGC GCCTGCGCGA CATCGGCCGC CTCGAGATGG GCGCCGCCGA CTACTCGCTG
CGTTCGCTCC TGAACAACGA CCCGGCCGTC GGCATGGGCG TGTTCCAGGC ACCGGGCTCC
AACGCGCTCG ATATTTCGTC GAACGTGCGC AAGACGATGG CCGAGCTCAA CAAGAACATG
CCCGAAGGGC TGGAGTACCG CATCGCCTAC GACCCGACGC AGTTCGTGCG CGCATCGATC
GAATCGGTGA TCCACACGCT GCTCGAAGCC ATCCTGCTGG TGGTGCTGGT CGTGATCCTG
TTCCTGCAGA CCTGGCGCGC GTCGATCATT CCGCTTTTGG CCGTGCCGGT GTCGGTGATC
GGCACCTTCG CGGTGCTGCA TGTCCTGGGC TTCTCGATCA ATGCGCTGAG CCTGTTCGGG
CTGGTGCTGG CGATCGGCAT CGTGGTGGAC GACGCCATCG TGGTGGTGGA GAACGTCGAG
CGCAACATCG AGGCGGGGCT CACGCCGCGT GAAGCCACCT ACCGTGCGAT GCGCGAAGTG
TCCGGCCCCA TCATCGCTAT CGCGCTGGTG CTGGTGGCCG TGTTCGTGCC GCTGGCCTTC
ATCAGCGGCC TCACGGGGCA GTTCTACCGC CAGTTCGCGG TGACGATTGC GATCTCGACG
GTGATCTCGG CGATCAACTC GCTCACGCTG TCGCCCGCGC TCGCCGCCTT GCTGCTGCGC
GGCCATGACC AGCCCAAGGA CGCATTGACG CGCGGCATGG ACAAGGCCTT CGGCTGGCTG
TTCCGCGGCT TCAACAAGCT CTTCAGCCGT GGCGCGGAAG CCTACAGCGG CGGCGTCAAG
GGCGTGATCT CGCGCAAGAC GCTGATGCTG GTGATCTACC TCGCGCTGAT CGGCGTGACC
TTCGGCCTGT TCAAGGCCGT GCCCAGCGGC TTCGTGCCGG CGCAGGACAA GCAGTACCTG
ATCGGCTTTG CCCAACTGCC CGACGGCGCC ACGCTCGACC GCACCGACGA AGTGATCCAG
CGCATGGGCG AGATCATGAA GAAGAACCCG AACGTGGAAG ACGCCATCGC CTTCCCGGGC
CTGTCGATCA ACGGCTTCAC CAACAGCTCG AACTCGGGCA TCGTGTTTGC CACGCTCAAG
CCCTTCGACC AGCGCAAGCG CGCCGACCAG AGCGGCGGTG CGGTGGCCGG GCAGCTCAAC
GGCGCCTTCG CCAGCATCCA GGACGCCTTC ATCGTGATGT TCCCGCCGCC GCCGGTGGCG
GGCCTGGGCA CCACGGGCGG CTTCAAGCTG CAGATCGAAG ACCGCGCCTC GGTCGGCTAC
GACCAGATGG ACGCGGCGGT GAAGGCCTTC ATGGCCAAGG CCTATGCCGC GCCGGAGCTC
ACGGGCATGT TCACGAGCTG GCAGGTCAAC GTGCCGCAGC TGTATGCGGA CATCGACCGC
ACCAAGGCGC GCCAGCTCGG CGTGCCGGTG ACGGACATCT TCGACACCAT GCAGATCTAC
CTCGGCAGCC TGTATGCGAA CGACTTCAAC AAGTTCGGCC GCACCTACAG CGTGCGCGTG
CAGGCCGATG CGCCGTACCG CGCCCGCGCC GAAGACGTGG GCATGCTGAA GGTGCGCTCG
ACCACGGGCG AGATGGTGCC GCTGTCGGCG CTGATGAAGG TCAATTCGAC CTTCGGGCCG
GAACGCGCCA TGCGCTACAA CGGCTACCTG GCGGCCGACA TCAACGGCGG CCCGGCCCCC
GGCTATTCGT CGGGCCAGGC GCAGGACGCG ATCACCAAGA TCGCGGCCGA GACGCTGCCC
AAGGGCGTGA GCTTCGAGTG GACCGAGCTG ACCTACCAGG AAATCCTGGC CGGCAACTCC
GCCTTCCTGG TGTTCCCGCT GGCCATCCTG CTGGTGTTCC TGGTGCTGGC CGCGCAGTAC
GAGAGCCTGA CGCTGCCGAT CGCCATCATC CTGATCGTGC CCATGGGCAT CCTGGCCGCG
ATGACCGGCG TATGGATATC GGGGGGTGAC AACAACGTCT TCACGCAGAT CGGCTTGATC
GTGCTGGTGG GGCTGAGTGC GAAGAACGCG ATTTTGATCG TGGAGTTTGC GCGCGAGCTC
GAGTTTGCCG GCAGAACGCC CATACAAGCG GCGATCGAAG CCAGCCGCCT GCGCCTGCGC
CCGATCCTCA TGACCTCGCT GGCCTTCGTG ATGGGTGTGC TGCCCCTCGT GCTGTCGACC
GGCGCGGGCT CGGAGATGCG CAAGGCCATG GGCGTGGCGG TGTTCGCCGG GATGATCGGC
GTGACGGCCT TCGGCCTGTT CCTGACGCCG GTGTTCTATG TGCTGCTGCG CCGCCTGGCG
GGCAACCGCG CGCTCAAGCT GCATGGCGAA GTGCCGCATG GCGAGGAGTT TGTCTCGGCG
GGCCATCCGG TCGCTGCGGC ACCCTCGTCG CACGGTGGTT CGGGCGGCGG CGGGCTGCAC
CCGGTGCCGG CCTCGCCGCG TCCTTCGCAT GACTGA
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| Protein sequence | MNLSKFFIDR PIFAGVLSLL ILIAGLIALR GLPISEYPEV APPSVVVRAQ YPGANPKVIA
ETVATPLEEQ INGVEGMLYM GSQATTDGVL TLTVTFRLGT DPDKAQQLVQ NRVSQAEPRL
PEEVRRLGIT TVKSAPDLTM VVHLVSPNNR YDINYLRNYA VLNVKDPLAR IEGVGQVQIF
GGGDYSMRVW LDPQKVAQRG LSASDVVAAI RGQNVQAAAG VVGASPGLSG VDMQLSINAQ
GRLQSEEEFG DIIVKSGTDG AVTRLRDIGR LEMGAADYSL RSLLNNDPAV GMGVFQAPGS
NALDISSNVR KTMAELNKNM PEGLEYRIAY DPTQFVRASI ESVIHTLLEA ILLVVLVVIL
FLQTWRASII PLLAVPVSVI GTFAVLHVLG FSINALSLFG LVLAIGIVVD DAIVVVENVE
RNIEAGLTPR EATYRAMREV SGPIIAIALV LVAVFVPLAF ISGLTGQFYR QFAVTIAIST
VISAINSLTL SPALAALLLR GHDQPKDALT RGMDKAFGWL FRGFNKLFSR GAEAYSGGVK
GVISRKTLML VIYLALIGVT FGLFKAVPSG FVPAQDKQYL IGFAQLPDGA TLDRTDEVIQ
RMGEIMKKNP NVEDAIAFPG LSINGFTNSS NSGIVFATLK PFDQRKRADQ SGGAVAGQLN
GAFASIQDAF IVMFPPPPVA GLGTTGGFKL QIEDRASVGY DQMDAAVKAF MAKAYAAPEL
TGMFTSWQVN VPQLYADIDR TKARQLGVPV TDIFDTMQIY LGSLYANDFN KFGRTYSVRV
QADAPYRARA EDVGMLKVRS TTGEMVPLSA LMKVNSTFGP ERAMRYNGYL AADINGGPAP
GYSSGQAQDA ITKIAAETLP KGVSFEWTEL TYQEILAGNS AFLVFPLAIL LVFLVLAAQY
ESLTLPIAII LIVPMGILAA MTGVWISGGD NNVFTQIGLI VLVGLSAKNA ILIVEFAREL
EFAGRTPIQA AIEASRLRLR PILMTSLAFV MGVLPLVLST GAGSEMRKAM GVAVFAGMIG
VTAFGLFLTP VFYVLLRRLA GNRALKLHGE VPHGEEFVSA GHPVAAAPSS HGGSGGGGLH
PVPASPRPSH D
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