| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2521 |
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| Symbol | |
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| ID | 7969998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2661572 |
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| End bp | 2662825 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793108 |
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| Product | glycine betaine/L-proline ABC transporter, ATPase subunit |
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| Protein accession | YP_002944413 |
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| Protein GI | 239815503 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
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| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.907997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAAG GAATTCTCAT CGACCATGTC TTCAAGGTGT TCGGCGACGC GCCCGAACAG
GCGCTCGAAC TCGTGCGCCA AGGTTTTTCG AAGAAGGAGA TCCTTGCGCA AACGGGCCAG
TCGATCGGCG TGTTCGATGC CACCTTCGAG ATCCAGGCCG GCGAGATCTT CGTCATCATG
GGCCTCTCGG GTTCGGGCAA GTCGACGTTG GTGCGCCTGC TGAACCGGCT GATCGAGCCG
ACCGCAGGCC GCATCGTGAT CGACGGCGCG GACATCAACG AGCACTCCGA CGCCAGGCTG
CGCGCGCTGC GCCGCAAGGA CATCAGCATG GTGTTCCAGT CCTTCGCGCT GATGCCGCAC
ATGACGGTGC GCGAGAACAC CGCCTTCGGC CTCGAACTGT CGGGCACGAG CAAGAAGGAA
CGCCTCGCGC AGGCCGACCT GGCGCTCGCG CAGGTGGGCC TCGCGGGCTG GGGCGACAGC
TATCCCGACG AGCTCTCGGG CGGCATGCAG CAGCGCGTGG GCCTGGCGCG CGCGCTGGCC
TCGGACCCGT CGATCCTCTT GATGGACGAG GCCTTCTCGG CGCTCGACCC GATCATCCGC
ACCGAGATGC AGTCGGAGCT GCTGCGGCTG CAGAAGGAGC AGCGGCGCAC CATCGTCTTC
ATCTCGCACG ACCTCGACGA GGCCATGCGC ATCGGCGACC GCATCGCGAT CATGAAGGAC
GGCCAGGTGA TCCAGGTCGG CACGCCCGAC GAGATCCTGC GCAGCCCGGC CGACGACTAC
GTGCGCAGCT TCGTGCGCGG CGTCGATGCG GCGGCTGTGT TCAAGGCGGC GGACATCGCG
CGCAAGTCGC TCACGGTGGT GTGCGAGCAC CCCGAGCGCG GTGCGCGCGC GGCGCTCAAG
CTGCTCGAAG ACCAGGACCG CGACTTCGCC TACGTGACGA GCCCGAACAA GCGCTTCCTC
GGCGTGGTGT CGGCGGACAC GCTGCGCGGC GCGCTCGACG GGCATTCAGG CTCGCTGGGG
CTGCAGCACG CATTCATTGG CGACCTGCCG CGCATCGATG CCGAAGCCCC GGTGGCAGGC
CTGATCGGCC AGCTCGCGCA GGCGCCGTGC GCGCTGCCGG TGGTGGCGAA CGATGGCCGC
TTCTGCGGTG CGATCAGCAA GACGACGCTG CTCAAGTTCC TCGACCGCGA CACGCCGCCG
ATCGAGCCCG TCCTGCCCAA CGCCGCACCC GCGCTCGCCG CCGAGCCGCA CTGA
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| Protein sequence | MAKGILIDHV FKVFGDAPEQ ALELVRQGFS KKEILAQTGQ SIGVFDATFE IQAGEIFVIM
GLSGSGKSTL VRLLNRLIEP TAGRIVIDGA DINEHSDARL RALRRKDISM VFQSFALMPH
MTVRENTAFG LELSGTSKKE RLAQADLALA QVGLAGWGDS YPDELSGGMQ QRVGLARALA
SDPSILLMDE AFSALDPIIR TEMQSELLRL QKEQRRTIVF ISHDLDEAMR IGDRIAIMKD
GQVIQVGTPD EILRSPADDY VRSFVRGVDA AAVFKAADIA RKSLTVVCEH PERGARAALK
LLEDQDRDFA YVTSPNKRFL GVVSADTLRG ALDGHSGSLG LQHAFIGDLP RIDAEAPVAG
LIGQLAQAPC ALPVVANDGR FCGAISKTTL LKFLDRDTPP IEPVLPNAAP ALAAEPH
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