| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2421 |
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| Symbol | |
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| ID | 7970465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2585928 |
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| End bp | 2586911 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644793003 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002944313 |
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| Protein GI | 239815403 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.719223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCAC TCGACTTCGA CTGGAAGCCG CTGCTTCTCG CCCCGATCCT CGCGCTGGCC
GCGCTGCCGC TCACGGGCTC GTTCTCGACC TGGCTCACGC TCACGGTCGC GGGGCTGGCG
ATGGGCATGA TCATCTTCAT CATCGCCTCG GGCCTCACGC TGGTGTTCGG GCTGATGGAC
GTGCTCAACT TCGGCCACGG CGTGTTCATT GCGCTCGGCG CCTTCGTGGC CAGCAGCGTG
CTCGGCCTGA TGGGCGACTG GACCGGTTCG GGCGAGCTGT GGCGCAACCT CGTTGCCGTG
TTCCCCGCGA TGCTGGTCGC CATGGTGGTG GCCAGCGCGG TCGGCCTTGC GTTCGAGCGC
TTCATCGTGC GGCCGGTGTA CGGCCAGCAC CTGAAGCAGA TCCTCATCAC CATGGGCGGC
ATGATCATCG GCGAGGAGCT CATCAAGGTG ATCTGGGGCC CGGCGCAAAT CCCGCTGCCG
CTGCCCGAGG CGCTGCGCGG CTCGCTGTTC GTGGCGGACG CGGCCATCAG CAAGTACCGG
CTGCTCGCGG TGGCGGTGGG CGTGGTGGTG TTCGGGCTGC TCGCATGGAC GCTCGCGCGC
ACCAAGATCG GCCTCCTGAT CCGCGCCGGC GTGCAGGACC GCGAGATGGT CGAGTCGCTG
GGCTACCGCA TCGGCCGGCT GTTCGTCGGC GTATTCGTGG TGGGCAGTGC GCTGGCGGGC
CTGGGCGGCG TGATGTGGGG GCTGTTCCAG CAGAACCTGG TGCCGCAGAT GGGCGCGCAG
GTCAACGTGC TGATCTTCAT CGTGATCATC ATCGGCGGGC TCGGCTCGAC GGGCGGCGCG
CTCATTGGCG CGCTGCTGGT GGGGCTCATG ACCAACTACA TCGGCTTCCT GCTGCCCACG
CTCACGCAGT TCGCGAGCAT CCTGCTGATG GTGGCGGTGC TGCTGTGGCG CCCGCAGGGC
GTGTACCCGG TGGCGAATCG TTGA
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| Protein sequence | MKALDFDWKP LLLAPILALA ALPLTGSFST WLTLTVAGLA MGMIIFIIAS GLTLVFGLMD
VLNFGHGVFI ALGAFVASSV LGLMGDWTGS GELWRNLVAV FPAMLVAMVV ASAVGLAFER
FIVRPVYGQH LKQILITMGG MIIGEELIKV IWGPAQIPLP LPEALRGSLF VADAAISKYR
LLAVAVGVVV FGLLAWTLAR TKIGLLIRAG VQDREMVESL GYRIGRLFVG VFVVGSALAG
LGGVMWGLFQ QNLVPQMGAQ VNVLIFIVII IGGLGSTGGA LIGALLVGLM TNYIGFLLPT
LTQFASILLM VAVLLWRPQG VYPVANR
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