Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2376 |
Symbol | |
ID | 7970419 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2539502 |
End bp | 2540347 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792958 |
Product | transcriptional regulator, IclR family |
Protein accession | YP_002944269 |
Protein GI | 239815359 |
COG category | [K] Transcription |
COG ID | [COG1414] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.157038 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAAAAA ACCAATCCGA CGTTCCTGCC GTTCCAGTCA TCCAGGTGAT CGAGCGCATG TTCGCGCTGA TCGACGTGCT CGCCTCCCGC GAGGAGGCCA TTTCGCTGAA GGAAATCAGC GAGAAGACGG GCCTGCACCC CTCCACCACC CACCGCATCC TCAACGACCT GGCGGTCGGC CGCTTTGTCG ACCGGCCCGA GGCCGGCAGC TACCGTCTCG GCATGCGGCT GCTGGAACTC GGCAACCTCG TCAAGGGCCG GCTCAACGTG CGCGACGCAG CCCTCGGGCC GATGCGCGAG CTGCACAAGC TCACCCAGCA GCCCGTCAAC CTCAGCATGC GCCAGGGCGA CGAGATCGTC TACATCGAGC GCTCTTACAG CGAGCGTTCG GGCATGCAGG TGGTGCGCGC CATCGGCGGG CGGGCCGCCC TGCACCTGAC CTCCACCGGC AAGCTGTTCC TGGCGGCCGA CGATCCGCAG CGCGTGCGCA GCTACGCCAC GCGAACCGGC CTGGCCGGCC ACACGCGCAA CAGCATCACG CAGTTGCCCG CGCTCGAGCG CGAGCTGTCG AAGGCGCGCC AGTACGGCAT TGCACGCGAC AACGAGGAGC TCGAGCTGGG CGTGCGCTGC ATGGCCGCCG GCATCTACGA CGACCAGGGC AAACTGGTGG CGGGATTGTC GATTTCCGCA CCCGCGGACC GGCTCGACGA AGGATGGCTG CCCAAGCTGC AGGCCACGGC CAACGAGATC TCGGGAGCGC TGGGCTACAA GGATGCCGCA GCGGCGGCGG CCGCGGGCCC TGCGGCAATC GGTGCCAGCA GCGCTTCAGG CCCCAGCGGG GGCTGA
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Protein sequence | MRKNQSDVPA VPVIQVIERM FALIDVLASR EEAISLKEIS EKTGLHPSTT HRILNDLAVG RFVDRPEAGS YRLGMRLLEL GNLVKGRLNV RDAALGPMRE LHKLTQQPVN LSMRQGDEIV YIERSYSERS GMQVVRAIGG RAALHLTSTG KLFLAADDPQ RVRSYATRTG LAGHTRNSIT QLPALERELS KARQYGIARD NEELELGVRC MAAGIYDDQG KLVAGLSISA PADRLDEGWL PKLQATANEI SGALGYKDAA AAAAAGPAAI GASSASGPSG G
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