| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2337 |
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| Symbol | |
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| ID | 7971195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2500978 |
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| End bp | 2502594 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792919 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002944230 |
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| Protein GI | 239815320 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.627607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTTA TCGCTGCTGT CTGCCTTGCA GGCTCACTGT TGCTCGCGGG CTGCGCGGGC
ACCAACAGCC CGTCTTCCTC CTCCACCACC ACATCCGCGC AATCCACCGC CGGCGGCACC
GGCGCCAAGG CTTCCGGCAG CGCGGCGCCG GTCTACCCGG GCGGACCGCT CACCCCCATC
ACCAGCAGCG AAGCCCATTC GCAGAGCGTC GTCACGCTGG CGCCGCCCGC CGACATGTGG
GACCGCATCC GCCGCGGCTT CAAGATGCCG AACCTCGAAA GCGACCTGGT GCGCGACCGC
GAGCAGTGGT ATGCCACCCG GCCCGACTAC ATCCAGCGCA TGACCGAGCG CTCGAACAAG
TACATCTTCC ACATCGTCGA AGAACTCGAG CGGCGCAACA TGCCGACCGA ACTCGCGCTG
CTGCCGTACA TCGAGAGCGC GTTCAATCCG CAGGCCATTT CCAGCGCACG CGCCGCGGGC
ATGTGGCAGT TCATGCCCGC CACCGGCACC GACTTCGACC TCAAGCAGAA CATCTTCCGC
GACGACCGGC GCGACGTGGT GGCCTCGACG CGCGCCGCAC TCGACTACCT GCAAAAGCTC
TACGGCATGT TCGGCGACTG GCAGCTCGCG CTGGCCGCCT ACAACTGGGG CGAAGGCAGC
GTGAGCCGCG CCATCGCCAA GAACCAGCGC CTGGGCCTGC CCACCACCTA CAGCGATCTT
TCCATGCCGG CCGAAACGCG GCTCTACGTG CCCAAGCTGC AGGCGGTGAA GAACATCGTG
GCCAATCCGC AGGCGTTCAA CACCGAGCTG CCGCTGATCG CGAACCACCC GTACTTCCAG
ACCGTAACGC TCACGCGCGA CCTCGACGTC GAACTGGCGG CCAAGCTGGC CGACATCCGC
CTCGAGGACT TCCGCGCCCT CAACCCGGCC GCGCACAAGC CGGTGCTGCT GGCGGCCGGC
ACGCCGCAGA TCCTCCTGCC CTGGGACAAC GCGGCCGTGT TCCAGCGCAA CTTCGATGCG
TACTCGCAAG GCCAGTACGC CAGCTGGACG GCATGGGTGG TTCCCAACAC GATGACGGTG
GCCGACGCAG CCCAGCGCTC GGGCATGAGC GAAGCCGACC TGCGCGCACT CAACAGCATT
CCGCCGCGCA TGCTCATCAA GGCCGGCTCC ACGCTCATCG TGCCGCGCGG CGCGCGCGTC
AAGGAAGACG TGACGGCGCT GGTGGCCGAC AGCGGCCACC TGAGCTTCCA GCCCGAAATC
GTCAATCGCC GCACCACCGT CAAGGCCGGA CGCAACGACA GCGTGGCCAG CATCGCGCGC
CGCTACAAGC TCAAGCCCGA CAGCGTGGCC GAGTGGAACG ACGTCAAGCT CAACCATTCG
TTCAAGCGCG GCTACAGCGT GGTGGTGTAC CTGCCGGTCC GCGCTGCACC CGAAGCGCGC
GTCGGCACGG GCGCGGCACG GGCGCACGGC CGCACCGCCG TTGCCGACAA GCGCGGCGGC
GGCCCCGTGA AGGCGGTTGC CGCACGCGGC CGCAACGTGG TGGTGGTGAA GACGCCGGCA
GGCAAGCAGG TGGTGCGCGA GAAGCGCGGC GGCACGCCGT CGAAGAAAAA GCGCTGA
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| Protein sequence | MKLIAAVCLA GSLLLAGCAG TNSPSSSSTT TSAQSTAGGT GAKASGSAAP VYPGGPLTPI
TSSEAHSQSV VTLAPPADMW DRIRRGFKMP NLESDLVRDR EQWYATRPDY IQRMTERSNK
YIFHIVEELE RRNMPTELAL LPYIESAFNP QAISSARAAG MWQFMPATGT DFDLKQNIFR
DDRRDVVAST RAALDYLQKL YGMFGDWQLA LAAYNWGEGS VSRAIAKNQR LGLPTTYSDL
SMPAETRLYV PKLQAVKNIV ANPQAFNTEL PLIANHPYFQ TVTLTRDLDV ELAAKLADIR
LEDFRALNPA AHKPVLLAAG TPQILLPWDN AAVFQRNFDA YSQGQYASWT AWVVPNTMTV
ADAAQRSGMS EADLRALNSI PPRMLIKAGS TLIVPRGARV KEDVTALVAD SGHLSFQPEI
VNRRTTVKAG RNDSVASIAR RYKLKPDSVA EWNDVKLNHS FKRGYSVVVY LPVRAAPEAR
VGTGAARAHG RTAVADKRGG GPVKAVAARG RNVVVVKTPA GKQVVREKRG GTPSKKKR
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