| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2325 |
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| Symbol | |
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| ID | 7971182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2486718 |
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| End bp | 2489981 |
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| Gene Length | 3264 bp |
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| Protein Length | 1087 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792907 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_002944218 |
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| Protein GI | 239815308 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.293004 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGGCG CCGCCTACGA ACACAATGGC CGGCACGTCA CGCGCGAGGC CTTCTACACC
GTCGCCTGCG ATCCGCGGCG CTCGGTGGCC GTCGAAGCCT GCGCGGGCGC GGGCAAGACC
TGGATGCTGG TGTCGCGCAT CCTGCGCGCG CTGCTCGAAG AGGGTGAATC CGCCTGCGAG
CCGCACGAGA TCCTGGCCAT CACCTTCACC AAGAAGGCCG CCGGCGAAAT GCGCGAGCGG
CTCGACCAAT GGCTCGAGCA GTTCGCTGAG CGCAGCCCCG AGGAACTGGT GCGCGAACTC
GTGATCCGCG GCGTCGAGCC CGATGCCGCG CTGGCCGCCG TGCCGCGCCT GCAAGGCCTC
TACAGGCGCC TGCTCGAAGG CGGCCGGCCG GTGCAGTTCC GCACCTTCCA CGCCTGGTTC
GCGGGCCTGC TGCGCAATGC GCCGCTGGCG GTGCTGCGCG AACTCGGCCT GCCCGCGAAC
TACGAACTGC TCGAGGACGA TGCGGAGGCG CGCTCGCGCA CCTGGCGCCC CTTCTTCGAA
GCGGTGACGG CCGACAAGGA GGCGCTGGCC GACTACTACG CCGTCGTCGC CACCTACGGC
CGGTCGCAGA CCGCCAAGGC CCTGGGCGAA GCGCTCACGC GCCGGGTCGA GTTCTCGCTG
TCCGATCCGG CGTCGGCGGT GCAGCATTTC AGCGCCATGC ATCCGTCGCT CGAAGGCCTG
GACGAACCGA CCGAGGCACT GCGCGGCGAG CAGGCCAGGC GCCGCTGGCT CGACCGCGCC
GCCGCGCTCG GCCGCGAAGC CAACAAGACG CCGCAGAAAG CGGCCGATGC GGTCATCGAC
GTGTTCGGCA CCGGCGAGCC GCCGCGGGAG TCGCTCGCGG CCGCGCTCGC GCACCTGCGC
AAGAATTTCT TCGTTGCCAC CGAAGACCGG CTCAACAAGA ACCTGCAGAA ATACCCCGCC
GCGCAGGAAG CCGAGGCCGA GCTCCAGACC CTGTGCGCCG CGCAGGCCCA GCACGCGGCC
TGGCTCTACC AGCAGCGCAT GACGCGCCTC ACGCGCCTTC TGATCGCAGC CTTCGCCGAG
GTCAAGCGCG CCCATGGCTG GGTCGACATG AACGACGTCG AACAGGCCGC ACAACTGCTG
CTGGGCCAGT CGGCGCTGTC GGGCTGGGTG CAGGAGCGGC TCGATGCGCG CATCGCGCAC
CTGCTGATCG ATGAGTTCCA GGACACCAAT CCGCTGCAGT GGCAGGCGCT CTACGGTTGG
CTCAGTGCCT ACACCGGCGC GGGCGGCAAA GCGCCGCGCG TCTTCATCGT GGGCGACCCG
AAGCAGAGCA TCTACCGCTT TCGCCGTGCC GAGCCGCAGG TGTTCATCGC CGCGAAGAAA
TTCGTGCGCG AAGGGCTGGG CGGCGAACTG CTCAATTGCG ACCACACCCA CCGCAACGCG
CGTGCGGTGG TCGGCCTCGT CAACCAGGCG ATGCTGGCCG CACAGGACGC CGGCGAGTTC
GACGGCTACC GCGCGCACAC CACCGAACGC AACGATCAGG GCGATCTTCT CAAGCTCCCG
CCCATCGATC GCGGGGCCCT CGATACCACC GCCGAGGCCG CGCCCGCGGA CGACGGCATG
CTGCACTGGC GCGACAGCCT GGTCACGCCG CGGGTGCTGC CCGAAGAGCA ACTGCTGCAG
AAGGAATGCG AACAGGCCGC GCGCTGGGTC GCGCAGCGCA TTGCCGATGG CACGCCGCCG
CGCCAGATCA TGGTGCTGGC GCGCCGCCGC AACCGGCTGT CCGCCATGCA GGACGCGCTG
CGCCAGCGCC ACATTCCCGT GCAGCAGCCC GAGAAGAACG AACTGCACGA CGCCCCCGAA
GTGCAGGACG TGGTGGCGCT GATCGATGCG CTGGTGTCGC CCGCGCACGA CCTTTCGCTG
GCGCGCGGGC TCAAGTCGCC GCTCTTCGGC ATTGGCGACG ATGCGCTGGT GCAACTGGCG
CTGCGCCAGC GCGAGCAACC CTCGTCGAGC TGGTTCGCGC TGATCCAGAA GGGCGAGGGC
CTGCCGGCGG AACTGGTCGC GGCCGGCGCC AGGCTCAAGC AGTGGCAGCG CTGGCTCGCC
GCACTGCCGC CGCACGATGC GCTCAGCGCG ATCTTCCATG ATGGCGATGT GCTGGCCAGG
TTCGGCGCCG CCATGCCTTC GGCCATGCGC CAGAGCGCGC TGGCCAATCT GCGCGGGCTG
CTGGCGGCCT CGCTCGAGAT CGAGGGCGCG CGCTTTGCCA CGCCCTATGC GCTGGTGCGC
GCGCTGCGCG CCGGCGGCGT CAGGGCGCCA TCCGTCGCCG TGCCTGATGC AGTGCAACTG
CTCACCGTGC ACGGCGCCAA GGGCCTGGAG GCTGACACCG TGCTCATGCT CGACTGCGAC
GCGCCGCCGC CGCGCGCCCA GACCATGGGC GTGCTGGTCG AATGGAAAGG CAGCGACAGC
GCGCCCACGC GCTTCGTGTT CCTGGCAAGC GAAAAAACGC CGCCGGGCTG CGCGGCCACG
CTGCTCGAGG AAGAGCAGCG CGCGCGCCAT CGCGAGGAGC TCAACGGCCT CTACGTCGCA
ACCACGCGGG CGCGCGAGCG CCTCGTGCTG TCGTCGGTGC AGCCGGCACG GGCCAACGAG
GGCAGCTGGT GGTCGCGGCT CGAATCGATG TGCGAACCCG TCGAAGCCGA TGAGCCGCTG
CTCGCGTTGC CGGTGGAGAC CGGGGGCGGC AGTTTCTCGA TGAAGAAGAT GCCCGTGCTC
GCGCCTGCGG CCAAGGAATC ACCGGCCACC AGGAAAGCCG CAAGCGCTAC CGTCGATGCG
CGGGCTGCCG CCTTCGGCCA GGCGATGCAC CGGCTGCTCG AATGGGCGCT GCCGGGCGAG
GCGCTGCCGC CCGCGCATGT GCGCGCCGCG GCCCGTGAAT TCATGCTCGA CGCGCAGCAG
GCGCGCGGCG CCGCGGTGCT GGCCGAGCGC ATCCGCGCGG GCGCCGGCGC CTGGGCGTGG
GATGAGCGCA TGATCGACTG GCACGGCAAC GAAGTGACGC TGGTCCACGA AGGCGAGACG
CTGCGCATCG ACCGACTGGT GCGCGAGCGC GCCAGCGGTG CCTGGTGGAT CCTCGACTAC
AAATCCGCTG CGCGCCCCGA ACGGGACGCG GAATTGATCG CACAGATGCA GCGCTACCGC
GCGGCCGTGC AACATGCCTA TCCCGGTGCC TTGGTGCGCG CCGCGTTCCT GACCGGGCAG
GGCGAACTGG TAACTCTCGA ATGA
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| Protein sequence | MNGAAYEHNG RHVTREAFYT VACDPRRSVA VEACAGAGKT WMLVSRILRA LLEEGESACE
PHEILAITFT KKAAGEMRER LDQWLEQFAE RSPEELVREL VIRGVEPDAA LAAVPRLQGL
YRRLLEGGRP VQFRTFHAWF AGLLRNAPLA VLRELGLPAN YELLEDDAEA RSRTWRPFFE
AVTADKEALA DYYAVVATYG RSQTAKALGE ALTRRVEFSL SDPASAVQHF SAMHPSLEGL
DEPTEALRGE QARRRWLDRA AALGREANKT PQKAADAVID VFGTGEPPRE SLAAALAHLR
KNFFVATEDR LNKNLQKYPA AQEAEAELQT LCAAQAQHAA WLYQQRMTRL TRLLIAAFAE
VKRAHGWVDM NDVEQAAQLL LGQSALSGWV QERLDARIAH LLIDEFQDTN PLQWQALYGW
LSAYTGAGGK APRVFIVGDP KQSIYRFRRA EPQVFIAAKK FVREGLGGEL LNCDHTHRNA
RAVVGLVNQA MLAAQDAGEF DGYRAHTTER NDQGDLLKLP PIDRGALDTT AEAAPADDGM
LHWRDSLVTP RVLPEEQLLQ KECEQAARWV AQRIADGTPP RQIMVLARRR NRLSAMQDAL
RQRHIPVQQP EKNELHDAPE VQDVVALIDA LVSPAHDLSL ARGLKSPLFG IGDDALVQLA
LRQREQPSSS WFALIQKGEG LPAELVAAGA RLKQWQRWLA ALPPHDALSA IFHDGDVLAR
FGAAMPSAMR QSALANLRGL LAASLEIEGA RFATPYALVR ALRAGGVRAP SVAVPDAVQL
LTVHGAKGLE ADTVLMLDCD APPPRAQTMG VLVEWKGSDS APTRFVFLAS EKTPPGCAAT
LLEEEQRARH REELNGLYVA TTRARERLVL SSVQPARANE GSWWSRLESM CEPVEADEPL
LALPVETGGG SFSMKKMPVL APAAKESPAT RKAASATVDA RAAAFGQAMH RLLEWALPGE
ALPPAHVRAA AREFMLDAQQ ARGAAVLAER IRAGAGAWAW DERMIDWHGN EVTLVHEGET
LRIDRLVRER ASGAWWILDY KSAARPERDA ELIAQMQRYR AAVQHAYPGA LVRAAFLTGQ
GELVTLE
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