Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2146 |
Symbol | hscA |
ID | 7973832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2290749 |
End bp | 2292605 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644792733 |
Product | chaperone protein HscA |
Protein accession | YP_002944047 |
Protein GI | 239815137 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0443] Molecular chaperone |
TIGRFAM ID | [TIGR01991] Fe-S protein assembly chaperone HscA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.843032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTCTTC TTCAAATTTC CGAACCCGGC CAGGCGCCCG ATCCGCATCA GCGCCGCATT GCCGTGGGCA TCGACCTGGG CACCACGCAT TCGCTGGTAG CAGCGGTGCG CAATGGCGTG GCCGAATGCC TGCCTGACGA CCAGGGCCGC GTGATCCTGC CTTCCGCCGT GCGCTATCTC GACCGCGAGC GGCGCCAGAT CGGCTTCGAC GCGCTCGCCG CGCGCGCGCA GGACGCCGCG AACACCATCA CCTCGGTCAA GCGCCTCATG GGCCGCGGGC TGGCCGACAT CGCCAACCGC GAGTCGATGT CGTACCGGCT GGTGGACGAG GGCGGCATGG TCAAGGTGGA GACGGCCGCC GGCATCAAGT CGCCGGTGGA GATCAGCGCC GAGATCCTGG CCACCTTGCG CTACCGCGCC GAAGACACCT TCGACGGCGA GCTCTACGGC GCCGTCATCA CCGTGCCGGC CTATTTCGAC GAAGGCCAGC GCCAGGCCAC CAAGGACGCC GCGCAGCTTG CCGGCCTCAA CGTGCTGCGC CTGATCAGCG AGCCCACGGC CGCGGCCATC GCCTACGGCC TGGACAACGC GAGCGAAGGC GTCTACGCCG TCTACGACCT GGGCGGCGGC ACCTTCGACA TCTCGATCCT GCGGCTCACG CAGGGCGTGT TCGAGGTCAT TGCCACGGGC GGCGACTCGG CCCTGGGCGG CGACGACTAC GACCACGCGC TCGCCGACTT CGTGCTCGCG CAAACCGGCC TGCAGGTGGG CAGCGACGCC GACAAGGCCG CCGTGCTGGT GGCTGCCCGT GCGGCCAAGG AGGCGCTGAC CGATGCCGAT TCCGTGGCGT TCCACGCCAA GCTTGCCGGC GGCGCCGCCC GTTTCGACCT GGCGCGCGCG CAATTCGACG CCGCCACCAA GCCGCTCACC GACCGCACGA TCGCGGCGGT TCGCAAGGCG CTGCGCGACG CGAAGCTCAA GCCCGACGAC CTGCAAGGCA TCGTGCTGGT CGGCGGCTCC ACCCGCATGC CGCAGATCCG CCGCGCCGTC GCCGAATTCT TCGGCCGCGA GCCGCTCGTC AACCTGAACC CCGACGAGGT CGTGGCGCTC GGCGCCGCCA TCCAGGCCAA CCAGCTGGCC GGCAACAACG GCGCGGGCGA TCTGCTGCTG CTCGACGTGA TTCCGCTGTC GCTGGGCATC GAGACCATGG GCGGGCTGGT CGAGCGCATC GTGCCGCGCA ACCAGACCAT TCCCACGGCA ATGGCGCAGG ACTTCACCAC CTACCAGGAC GGCCAGACGG CCCTCGCACT GCACGTGGTG CAGGGCGAAC GCGACCTGGT CGCCGACTGC CGCAGCCTGG CGCGCTTCAC CTTGCGCGGC ATCCCGCCCA TGGCGGCAGG CGCGGCGCGC ATCCGCGTGA CCTTCACCGT CGATGCCGAT GGCTTGCTGA GCGTCAGCGC CAAGGAGCAG GGCAGCGGCG TGGAGGCCAG CGTGGCGGTC AAGCCTTCGT ACGGACTCTC GGACGACCAG ATCGCGACCA TGCTGCAGGA GAGCTTTTCC ACCGCGCAGC AGGACATGCA GGCGCGTGCG CTGGTGGAGG CGCGCGTCGA TGCCGAGCGC ATGCTGCTTG CCACCCAGAG CGCGCTCGAT GCTGACGGCG ATCTGCTGGG CGAAGAAGAG CGCGCTGTCA TCGATGCGTC GATGGCGAAG CTGCGCGAAG CCGCCAAGGG CAATGACGCC GCGGCCATCG AAGGCGCCAC CAAGGCGCTG GCCAACGACA CCGAAGCCTT TGCCGCCCAG CGCATGAACG CGGGCATTGC GCGCGCGTTG TCGGGCCGCA AGCTCGAATC CCTCTGA
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Protein sequence | MALLQISEPG QAPDPHQRRI AVGIDLGTTH SLVAAVRNGV AECLPDDQGR VILPSAVRYL DRERRQIGFD ALAARAQDAA NTITSVKRLM GRGLADIANR ESMSYRLVDE GGMVKVETAA GIKSPVEISA EILATLRYRA EDTFDGELYG AVITVPAYFD EGQRQATKDA AQLAGLNVLR LISEPTAAAI AYGLDNASEG VYAVYDLGGG TFDISILRLT QGVFEVIATG GDSALGGDDY DHALADFVLA QTGLQVGSDA DKAAVLVAAR AAKEALTDAD SVAFHAKLAG GAARFDLARA QFDAATKPLT DRTIAAVRKA LRDAKLKPDD LQGIVLVGGS TRMPQIRRAV AEFFGREPLV NLNPDEVVAL GAAIQANQLA GNNGAGDLLL LDVIPLSLGI ETMGGLVERI VPRNQTIPTA MAQDFTTYQD GQTALALHVV QGERDLVADC RSLARFTLRG IPPMAAGAAR IRVTFTVDAD GLLSVSAKEQ GSGVEASVAV KPSYGLSDDQ IATMLQESFS TAQQDMQARA LVEARVDAER MLLATQSALD ADGDLLGEEE RAVIDASMAK LREAAKGNDA AAIEGATKAL ANDTEAFAAQ RMNAGIARAL SGRKLESL
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