| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2121 |
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| Symbol | |
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| ID | 7973807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2264577 |
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| End bp | 2265794 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644792708 |
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| Product | integrase family protein |
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| Protein accession | YP_002944022 |
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| Protein GI | 239815112 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCACCT TCAAGCAGCT TCCGTCCGGC AACTGGCGCG CGCAAGTCCG CCGCAAGGGT
GTCTACGCGA GCGAAACCTT TCGAAGACAC AAGGACGCCC AGGAATGGGC TCTCGCGACC
GAGCGCCGCA TCGATCTGGG CGAGCCTGCC ACCCGTTCAA AGGTCAAGGA CCCGACCACC
TTCGGCGATC TGATCGATCT GCACGTCACC GACATGAAGG AAGTGTTGCG AGCGCCACGG
CGTTCCAAGG CCTTCACCCT CGATGCGCTG AACACGAAGC TGGGCAAGCT GAAGCTGAAG
GACCTCACGC GCGAGCGGCT CATCCAGTTC GGCAAAGACC GCGCCAAGGA AGGCGCCGGC
CCCGTCACCA TCAGCATGGA CATCGGCTAC ATCAAGCTGG TAGTTTCGCA CGCGGCGGCC
GTTCACGGGG TTCGCGTTCC GGTAGAGCCC ATCGATCTGG CCCGCATCGC GCTCAAGCGC
CTGGGCTTGG TCGGCAAGGG GCGGGAACGA GACCGCCGCC CTACCCTCGA CGAACTGCAG
GCGCTTGCCG ATTACTTCGC CAGCAATTCA CGGCAGATCA TCCCGCTGGG GCGAATCATG
CGGTTCGCGG TCGCCACCGC GATGCGCCAG GACGAGATCT GCCGCATCCG ATGGGAGGAC
ATCGATGCCA AGACTCGTAC CGTGATTGTG CGTGACCGGA AAGACCCACG AGACAAGAAC
GGCAATGACC AGAAAGTGCC GCTGCTCGAT GTCACGGGAT TCGATGCCTG GGCCATTCTC
GAGGAGCAGA AACCGTTCTC CGGGAACAGC AGCCTTGTCT TTCCGTACAA CGGCCGCTCC
GTCGGGACCG CGTTCCGTCG AGCTTGCAAG GAATTGAAGA TCAAGGACCT CAAGTTCCAT
GATCTACGGC ACGAAGCAGC CAGTCGTCTG TTCGAGGCGG GGTTCACCAT CGAACAGGCT
GCGCTGGTGA CTGGGCACAA GGACTGGAAG ATGCTCAAGC GATACACCCA TCTGAGGCCG
GAACACCTGC GCGGCGTCCG GCCCAAGCAC ATTCCACCGT CGCTTGATCT ACCCACTGGC
CCCACGCCTG CGGACATCGC TTTGGGCGCG TGGAACAACC CAGAGCGCCG TGCCCCACAG
CCCAACTCGG CTCACCCCTC GCAAGTTGCA AAGCCGCATC ATGAACATGA AGCCCTCGGC
CTGAGCGCTT CAATCTAG
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| Protein sequence | MPTFKQLPSG NWRAQVRRKG VYASETFRRH KDAQEWALAT ERRIDLGEPA TRSKVKDPTT
FGDLIDLHVT DMKEVLRAPR RSKAFTLDAL NTKLGKLKLK DLTRERLIQF GKDRAKEGAG
PVTISMDIGY IKLVVSHAAA VHGVRVPVEP IDLARIALKR LGLVGKGRER DRRPTLDELQ
ALADYFASNS RQIIPLGRIM RFAVATAMRQ DEICRIRWED IDAKTRTVIV RDRKDPRDKN
GNDQKVPLLD VTGFDAWAIL EEQKPFSGNS SLVFPYNGRS VGTAFRRACK ELKIKDLKFH
DLRHEAASRL FEAGFTIEQA ALVTGHKDWK MLKRYTHLRP EHLRGVRPKH IPPSLDLPTG
PTPADIALGA WNNPERRAPQ PNSAHPSQVA KPHHEHEALG LSASI
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