| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2113 |
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| Symbol | |
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| ID | 7973799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2254579 |
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| End bp | 2256090 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792700 |
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| Product | Integrase catalytic region |
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| Protein accession | YP_002944014 |
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| Protein GI | 239815104 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4584] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACATGA TTGGCAGGAT CCGACGGCTG CACGCGAGGG ACAAGCTGTC GGAGCGCGAG
ATAGCGCGCA TGACAGGGCT GTCGCGCAAC ACGGTGTCAA AGTGGCTGCG CGCACCGGCA
GCCGAGGCGC CGAAGTACCG GCGCGAAGCA AGGCCGAACA AGCTGAGTGC ATTCGAGACA
GCGCTGAAGC AGGCATTGAC GGCCGATGCG CGACGGCCCA AGCACGAGCG GCGCACGGCA
CGCGCGCTGC ACGCTGAGAT CAAGGCGGCG GGCTACGACG GCGGGTACTC GGCCATCACT
GACTTCGTTC GAGCGTGGCG CCAAGGCGAG GGACAGGCAG TCAACGTCAC CGCGTTCGTT
CCACTGACCT TCGAGCTCGG CGAGGCCTTC CAGTTCGATT GGAGCGAAGA AGGCCTGGTC
GTCGGCGGCA TCTATTACCG CATGCAGGTG TCGCACCTGA AGCTGTGCGC GAGCCGTGCG
TTCTGGCTGG TGGCGTACCC GAGCCAAGGT CACGAGATGC TGTTCGACGC CCACACGAGG
TCGTTTGCAG CGCTGGGTGG TGTGGCGCGC CGCGGGATCT ACGACAACAT GCGCACCGCC
GTCGATAAGG TTCACAAGGG TAAGGGTCGC ACCGTCAATG CCCGCTTCGC CGTGATGTGC
GCGCACTACC TGTACGACCC CGACTTCTGC AACGTCGCCT CGGGCTGGGA GAAGGGGCGC
GTGGAGAAGA ACGTACAGGA CAGCCGTCGG CGCATCTGGA TCGAGGCGGG CCGGCGCCGC
TTCGGCTCCT TCGTCGAACT CAATGCCTGG TTGGCGGAGC GATGCCGAGC GCTGTGGAAC
GAGGTGCGCC ACCCCGAGCA CAGCCAGTTC AGCGTGGCCG AGATGCTCGA GCACGAGCGT
CCCCACCTGA TGCCCATGCC TGAGCCCTTC GATGGCTACG TAGAGAAGCC TGCCCGGGTG
TCGAGCACGT GCCTGGTGTC GGTGGCACGT AACCGCTACT CGGTGCCCTG CGAGCTGGCC
GGGCAGATGG TCAGCACGCG GCTGTATCCG GGCGGCATCG TGGTTGTTGC CGATGATGCG
GTGGTTGCGC GACACGAGCG CCTGAGCGCC TCTGGCGGCA CCCGCTACGA CTGGCAGCAC
TACATTCCGC TCATCCAGCG CAAGCCTGGT GCATTGAGGA ACGGTGCGCC CTTCGCAGAC
ATGCCCGAGG CACTGCAGCA ACTGCGCCGC GGCCTGCTGC GCCAGGCCGG TGGAGATCGC
GTGATGGCGC AGGTGTTGGC CATCGTGCCG ACGGCGGGGC TGGACGCGGT GATCGTGGCG
GTCGAGTTGG CGCTGCAGAG TGGTCCGCCA TCGGGTCGGG TCAGCGTGGA GCACGTCGTC
AACGTCCTCG GGCGGCTCAC CGCACCGGCA GCACCGCAGA GTGCGCAGAC GGCGCTGCAG
ATCGTCACGC CGCCGCTGGC CAACACGGCC CGATACGACG GCTTGCGTGG ACAGGAGGTG
GACCATGCGT GA
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| Protein sequence | MDMIGRIRRL HARDKLSERE IARMTGLSRN TVSKWLRAPA AEAPKYRREA RPNKLSAFET
ALKQALTADA RRPKHERRTA RALHAEIKAA GYDGGYSAIT DFVRAWRQGE GQAVNVTAFV
PLTFELGEAF QFDWSEEGLV VGGIYYRMQV SHLKLCASRA FWLVAYPSQG HEMLFDAHTR
SFAALGGVAR RGIYDNMRTA VDKVHKGKGR TVNARFAVMC AHYLYDPDFC NVASGWEKGR
VEKNVQDSRR RIWIEAGRRR FGSFVELNAW LAERCRALWN EVRHPEHSQF SVAEMLEHER
PHLMPMPEPF DGYVEKPARV SSTCLVSVAR NRYSVPCELA GQMVSTRLYP GGIVVVADDA
VVARHERLSA SGGTRYDWQH YIPLIQRKPG ALRNGAPFAD MPEALQQLRR GLLRQAGGDR
VMAQVLAIVP TAGLDAVIVA VELALQSGPP SGRVSVEHVV NVLGRLTAPA APQSAQTALQ
IVTPPLANTA RYDGLRGQEV DHA
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