Gene Vapar_2078 details

Gene Information

• Locus tag: Vapar_2078
• ID: 7972480
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2222925
• End bp: 2224958
• Gene Length: 2034 bp
• Protein Length: 677 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644792669
• Product: ParB domain protein nuclease
• Protein accession: YP_002943983
• Protein GI: 239815073
• COG category: [K] Transcription
• COG ID: [COG1475] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR00180] ParB-like partition proteins

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATACTG TTGATGCGTC AGAAGTTTCC GCCCTTGAAG CAGCCGTACC TGCGCAGAAC 
ATGCTGTTGG TGCCGCTTTC GCGGCTGCGC CCGCGCCCGT CCAAGCGCAA CGTGCGCCGC 
AAGGCGCGCA CGTCGATTGC TGCGCTGGCT GCAAGCATCC GGCGTCTGGG CCTTCTGCAA 
AACCTCACCG TGATTCCTTG CGGCGATGAC GGTGACTTCG AGGTCGTCGC CGGTGGGCGC 
CGCCTCGCGG CCCTGAAGCT GCTCGCCAAG AAGCGGCGCA TCCCAGAGGA TTGGTCGGTG 
CCTTGCATGC TGGTGGCCGA CACGCTGGCG CGCACGGCGA GCCTCACCGA GAACGTGCAG 
AGGGAGGCCA TGGGACCGGT CGAAGAACTG CTCGCATGGA AGGCCCTTGT GGCCGAAGGC 
CGCTCGGTGG AGGCCATCGC GGCGGACTTC GGCGTGATGC CGTTGGTGGT CAGACGCCGG 
CTGCGGCTCG CCAACGTCTC GCCGCGCCTG CTGGCGGACT ATCAGACCGG CGCTGCGACC 
CTCGAACAGT TGATGGCGCT CGCCATCACC GACGACCACG CGGCGCAGGA GGCCGCGTTC 
TACGACAGCC CCGCATGGCA GCGCAGCCCC GAGGCGCTGC GTGATCATCT GACCCATGAA 
GAGATCGATG CCAGCCGCGA TGCGCTGGCC CGTTTCGTCG GACTGGAAAC CTACGAGGCC 
GCAGGAGGTG GTGTGCGGCG CGACCTGTTC TCGGACGAAG AGCAGGGAGG CTATCTCACC 
GATGCCGGAT TGCTGGACAC GCTCGCGCGT CACAAGCTCG CCGATGTTGT CGAGCAGGTT 
CAGCTGGAGG GCTGGGGGTG GGTGGAGGTC GCGCCGCGCG CCACGGCTGC CGAGCTGCAC 
GTGTTCCAGC GGGTACGGCG CACGCGCCGC GACCCGAGCA GGGCCGAGGC CAAGCGCATT 
GCCAAGCTTG AAGGAAAACA GAACGAGCTA CAGGACCGTC TCGATGACGA GGATGCGGAA 
CTGAGCGAGG ACGGCGTGCA GGCTCTGCAG GAGGAGCTGA ACCGGCTCGG CAACGAGCTG 
GAAGCCATCG AGCAGACCCT GACGGTTTAT CCGCCCAGTG CGGTGGAAAT GGCGGGTGTC 
GTGGTGTCCG TGGACCACAT GGGCGGCGTG GTGGTGCACC GTGGGCTGCT GCGCGAGGAA 
CAGGCCAAGA CGTTACGGGC GCAAGAGCGG CAGAAGGCCG GTGCGGCAGG CGTGGAGCGC 
AATGGTTACG GCGGCGATGC TGATGAGTCG GTCAAGTCCG GTATCTCGGA GAAGCTGGCG 
AAGCGGTTGA GCGCGCATCG CACAGCCGCC TTGCAGGCCG AGGTCGCCCG GCATCCGCAG 
GTGGCATTGG TGGCTGTCGT GCATCGGCTC GCGCTGCGCG TGGTCTTCGA CAGCTACGGT 
TCGGGTGGTT CTCCCGTCGA CATCATCGCC ACCCCGCAGG ATGGGCTGAC GCAGCATGCC 
CCGGATGTGG GGGGCTCGCC TGCGGCGGTG GGCATGGGCA AGGTCCGCGA GGCATGGGCG 
GGCCGCTTGC CGAAAGAGCC CAAAGCTCTC TTTGCCGAAC TGCTGGCCCT GCCGCAAGGC 
GAGCTGCTGT CGTTGCTGGC GGTGTGCGTG GCTTCCACCG TCAGCGTGCT GGCATCCCGC 
GAGGACGAGG TGCCTGCCGC CGGGTTGGCC GAGGCCGTGA GCCTCGACAT GCATGACTGG 
TGGGCGCCGA CCGCCGAAGG CTACTTCGCG CATGTCTCCA AGGCGAAGGC GCTGGAGGCG 
GTGCTGGCCT TCGCACCCGA TCACGTGACC CGGCTGTCCA AGCTCAAGAA GGCCGAGATT 
GCGAGCGAGG CCGAAAGGCT CGCGGCCGGG ACCGGGTGGC TGCCGGTGAT GTTCAGGGGC 
AAGGCAGAAC CGAGCCCTGA GACGCCAATA TCGTCTGGAA TCGACGCGGT GCTGGAAGCG 
GATGAAGCCG CTGCCGAGGC CGAAGAGCGC GAGGGGCTGG CGGCAGTCGC CTAA 

 

Protein sequence

MNTVDASEVS ALEAAVPAQN MLLVPLSRLR PRPSKRNVRR KARTSIAALA ASIRRLGLLQ 
NLTVIPCGDD GDFEVVAGGR RLAALKLLAK KRRIPEDWSV PCMLVADTLA RTASLTENVQ 
REAMGPVEEL LAWKALVAEG RSVEAIAADF GVMPLVVRRR LRLANVSPRL LADYQTGAAT 
LEQLMALAIT DDHAAQEAAF YDSPAWQRSP EALRDHLTHE EIDASRDALA RFVGLETYEA 
AGGGVRRDLF SDEEQGGYLT DAGLLDTLAR HKLADVVEQV QLEGWGWVEV APRATAAELH 
VFQRVRRTRR DPSRAEAKRI AKLEGKQNEL QDRLDDEDAE LSEDGVQALQ EELNRLGNEL 
EAIEQTLTVY PPSAVEMAGV VVSVDHMGGV VVHRGLLREE QAKTLRAQER QKAGAAGVER 
NGYGGDADES VKSGISEKLA KRLSAHRTAA LQAEVARHPQ VALVAVVHRL ALRVVFDSYG 
SGGSPVDIIA TPQDGLTQHA PDVGGSPAAV GMGKVREAWA GRLPKEPKAL FAELLALPQG 
ELLSLLAVCV ASTVSVLASR EDEVPAAGLA EAVSLDMHDW WAPTAEGYFA HVSKAKALEA 
VLAFAPDHVT RLSKLKKAEI ASEAERLAAG TGWLPVMFRG KAEPSPETPI SSGIDAVLEA 
DEAAAEAEER EGLAAVA