Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2002 |
Symbol | |
ID | 7969795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2147832 |
End bp | 2148440 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644792600 |
Product | isochorismatase hydrolase |
Protein accession | YP_002943914 |
Protein GI | 239815004 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1335] Amidases related to nicotinamidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0995803 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCCTC CCCGCTCGCA CTCGCAGCCC CCCGCCCTCG CACCGGCTCC CGCCGCGGGC CACACGGCCC TCCTGATCAT CGACATGATC AGTTGCTGGG ACTTTCCCGA TGCCGAAAAG CTGTTGCCCG GCGCGCATTT CATTGCGGGG CGCATCGCAG CGCTGAAGGC GCGCTGCACG CGCGCCGGGG TGCCCGCCAT CTACGTCAAC GACAACCGCG GGCGCTGGCG CTCGGACTTT CCCAAGCTGG TGGAACTGTC GCTGGCCTCT GGAGGCGCCG GTGCCGAGAT CACCTCGACG CTGCTGCCCG AGGAAACGGA CTACTTCGTG CTCAAGCCCA AGCAGTCCGC TTTCTTCGCG ACGCCGCTCG AGCTGCTGCT CGCCTATCTC AAGGCCACGC GGCTGATCGT GACCGGCGTG GCCAGCGACC AGTGCATCTG GGCCACCGTG GCCGACGCGG GCATGCGCGA CCTCGAGGCC GTCGTTCCGC GCGATTGCGT CGCCTCGCAG ACGAGCGCAC GCAATGAGCG CTTCCTGCGC CAGGCGCAAG AGGCGCTGCG CGTCTCCACC ACGCCCGGGG CGCGCATCCG CCTGCCTGCG AAGCGCTGA
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Protein sequence | MAPPRSHSQP PALAPAPAAG HTALLIIDMI SCWDFPDAEK LLPGAHFIAG RIAALKARCT RAGVPAIYVN DNRGRWRSDF PKLVELSLAS GGAGAEITST LLPEETDYFV LKPKQSAFFA TPLELLLAYL KATRLIVTGV ASDQCIWATV ADAGMRDLEA VVPRDCVASQ TSARNERFLR QAQEALRVST TPGARIRLPA KR
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