Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1979 |
Symbol | |
ID | 7969772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2117307 |
End bp | 2119361 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644792577 |
Product | alpha amylase catalytic region |
Protein accession | YP_002943891 |
Protein GI | 239814981 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.379903 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAC TGTTCGCAAA TCCGCAGGCT CCCGCGGCTT CCTCCGTGGC GCCCGAGGTG CAGGACGGCA ACCGGCGCGC GGTCGTCGAT GCCGTGCTGC CGTCGGTGGA CAACGGCCGC TTCGCCGTGA AATGCATCGT CGGCGAAAGG GTGCAGGTGA AGGCGCACTG CTTCACCGAC GGCCACGATG TGCTGCGCGT GCTGCTGTGC TGGCGTCCGC AGGGCAAGGC CGAGTTCCGC GAAGTGCCGA TGAAGCCGCT GGTCAACGAC GTGTGGGAGG CATCCTTTGC GCCGCCCGCG CTCGGGCGCT ACTTCTACAC CGTGGTGGCC TGGGTCGACC CGTTCGAATC GTGGCGCCAT GAAATGACGC GCCGCGTGGA CCCCGACGAC GTGCGCATCG CGTCGCAGGT GGGCGCGCTG GAAGTGGCCG GCGCGGCCGA GCGGGCCGAG GGCGCGGACC GGCAGGCGCT GGCCAACTGG GCCACCGAGC TCGATGCCGT GGCGGCCGAC CCCGGCGCGG ACGTGTCGGC GCTCAAGGCG CTGGCGCTGG ACGAAGAGCT CGCCATGCTG GCGCGCCGCC ATCCCGACCG CCGGCACGAG GTGCGCTATT CGCTCGAACT GCCGCTGGAA GCCGAGCGCG AGCGTGCGCG CTTCAGCACC TGGTACGAGC TGTTCCCGCG CTCGGCCGGC ACAACGCCCG GCGTGCACGG CACCTTCAAG GACGTGGAGG CGCGGCTGCC CGCCATTGCC GCCATGGGCT TCGACGTGCT GTACTTTCCG CCGATCCACC CGATCGGCCG GCTGCAGCGC AAGGGCCCCA ACAACGCGCT GGCCAGCGGC GCGGACGACG TCGGCAGCCC CTGGGCCATT GGCGCGGCCG AGGGCGGCCA CAAGGCCATT CTTCCGGCGC TTGGCACGGC GGAAGACTTT CGCCACCTCT GCGCAGAGGC CGCCTCGCAC GGCCTGGAGA TCGCGCTGGA CATCGCCTTC CAGTGCGCCC CCGACCATCC CTATGTGAAG GCGCACCCCG ACTGGTTCCG CTGGCGCCCC GACGGCAGCG TGCAGTACGC GGAGAACCCG CCCAAGAAGT ACCAGGACAT CTACCCCTTC AACTTTGAGA GCGAGGACTG GCGCGGCCTG TGGGCTGAGC TGCGCAGCGT GATCGAGCAC TGGATAGGCG AGGGCGTGCG CATCTTCCGC GTCGACAACC CGCACACCAA GGCCTTCGCG TTCTGGGAAT GGGTGATCGG CGAGATCCGG CGCCAGCACC CGGAAGTGAT CTTCCTGGCC GAGGCCTTCA CGCGGCCCAA GGTGATGCAC CGGCTCGCGA AGCTGGGCTT CTCGCAGTCC TACACCTACT TCACCTGGCG CAACACCAAG CAGGAACTGG TCGAGTACTT CACCGAGCTT TCCACGCCGC CGGGCGTGGA CTACTTCAGG CCCAACGTGT GGCCCAACAC GCCCGACATC CTGCACGAGC AGCTGCAGGG CGGCGAAGCC TCGGTCTACA TGGCGCGGCT GGTGCTGGCC GCCACGCTCG CGGCCAACTA CGGCATCTAC GGGCCGGCCT ACGAGCTGCG CGAACACCGG CCGCGCTCGT CCGGCAGCGA GGAATACCTC GACTCCGAAA AATACCAGCT GCGCCACTGG AACCACGACG ACCCGGGCAG CCTGGCGCCG TTCATCACGC GCGTGAACCG CATCCGCCGC GAGAACCCGG CGCTGCACCG GGACCGCGGC CTGCGCTTCC TGCGCATCGA CAACGACCAG CTGCTGGCCT ATGCCAAGGT GTCGGAGGCC GGCGACAACG TGGTCGTGAC CGTGGTCAAC CTCGATCCGC ACAACGTACA GTCGGGCTGG CTCGAGCTCG ACCCCGAAAG CGTGAACGTC GAGCGTTCGC GCCCGTTCCA GATGCACGAC CTGCTGAGCG GGCAGCGCTT CATCTGGCAG GGCGGCTGGC ACTACGTCAA GCTCGATCCG CACAGCGTGC CCGCGCACAT CTTCGTGGTG CGGCGGCGCC ATGGCGACGA GCGCGACTTC GACTACTTCC TGTGA
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Protein sequence | MKKLFANPQA PAASSVAPEV QDGNRRAVVD AVLPSVDNGR FAVKCIVGER VQVKAHCFTD GHDVLRVLLC WRPQGKAEFR EVPMKPLVND VWEASFAPPA LGRYFYTVVA WVDPFESWRH EMTRRVDPDD VRIASQVGAL EVAGAAERAE GADRQALANW ATELDAVAAD PGADVSALKA LALDEELAML ARRHPDRRHE VRYSLELPLE AERERARFST WYELFPRSAG TTPGVHGTFK DVEARLPAIA AMGFDVLYFP PIHPIGRLQR KGPNNALASG ADDVGSPWAI GAAEGGHKAI LPALGTAEDF RHLCAEAASH GLEIALDIAF QCAPDHPYVK AHPDWFRWRP DGSVQYAENP PKKYQDIYPF NFESEDWRGL WAELRSVIEH WIGEGVRIFR VDNPHTKAFA FWEWVIGEIR RQHPEVIFLA EAFTRPKVMH RLAKLGFSQS YTYFTWRNTK QELVEYFTEL STPPGVDYFR PNVWPNTPDI LHEQLQGGEA SVYMARLVLA ATLAANYGIY GPAYELREHR PRSSGSEEYL DSEKYQLRHW NHDDPGSLAP FITRVNRIRR ENPALHRDRG LRFLRIDNDQ LLAYAKVSEA GDNVVVTVVN LDPHNVQSGW LELDPESVNV ERSRPFQMHD LLSGQRFIWQ GGWHYVKLDP HSVPAHIFVV RRRHGDERDF DYFL
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