| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1967 |
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| Symbol | |
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| ID | 7969760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2104123 |
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| End bp | 2107203 |
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| Gene Length | 3081 bp |
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| Protein Length | 1026 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792565 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002943879 |
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| Protein GI | 239814969 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTGC CCGGTCTTCG GAACATCCGC ATCAGCCTGA ACACACGCCT CGGCCTGGGC
ATCGCCGCGG TCGTCCTGGC GGCCACCCTG GCCATTGCGA CGGTCGCCCT GCAGCTGGTC
AAGACCAGCA TGAAGGCCTC CATCGGAAGC GAGGCCTTCG CCCGCCTGTC GGCCATTGCG
AACACCATCG ACCAGAAGTT CGTCAGCCGC CGCACGCTGC TGGAGACCTT CGCCGACAGC
ACGGCGCTCA ACGAGTTTCC CGACACGCCG GCGCTGCAGG CCTTTCTCGA AAAGCATCCA
TCGCTGCGCA AGGCTTTCAG CAACGTCGCC TTCTTCACGG CCGAGGGCGA CTTGGTCGCG
AGCCTGAGCG GCGCGCAGCA GCCCGGCAAG GTCAACATCA AGGACCGTGC GTACTTCCAG
CAAACGCTCG CGGCCCGCGC CGGCGTGATC TCCGAGCCCT ACCTCAACCG GCTCACCGGC
CTGGCGCAGA TCGCCATGAC CGAGCCGGTG CTGGACGCCG CCGGCAACGT GCGGTACGTG
ATCTCGGGCG CCATCAACCT GAAGGACCGG AACATCCTGG GCGAGCTCGC CGACCTGAAA
TTCGGCGAGA CGGGCTACCT GTTCATCACC AGCACGGAAG GCGTGGTGAT CGACCATCCG
CGCACCGAGC GCATCATCAA CCAGACGGGC CTGAAGGGGG TCGGCAACCC CGAGATCGAG
CGCCCGATCG ACGGCTACGA AGGCGCGACC GAAGGCTTCA ACCATGCGGG CGTGCACGGC
CTGTACGCCT TCAAGCGCAT CCCGCAGACC AACTGGGTGC TGGGGTCCAT GTACCCGAGC
ACGGAAGCCT TCGCCCGGGT CGACGCGATC GAGCGCTCGG CATGGATCGG CACGGTGGTG
CTCGCCATGC TCGCGGGGGC CGCGGTGCTG GGCTTCGTGC GCCAGCAGCT CACGCCGCTT
CGGCACCTGC ACCGGCACAT GCTGGACGTG GACAACCCGG CCCTGCAGAC GGCCGTGCCG
CGCACCTACC GGCACGACGA GATCGGCGAT CTCGCGCGCA CCTTCGACAC GCTGATGCAG
CAGCGCAAGT CGAGCGAGAA GTTCCTGCGC GACATCACCG ACAACTTGCC CGCGCTGGTG
TCGCACGTCG ATGCGCAGGG CCGCTACACC TTCGTGAACG CCCCGCTGTG CAGGAAGCTC
GACCGCGGCG CGGCCCAGCT GATCGGGCGC ACGGCGCAGA ACATCGGCGA GGACGAGACG
GTGGACGCCG CCGTGCGGCG CGTGCTGGCC GGCGAAGCCG TGAGCTTCGA GAGCCGCGGC
GAAGCCAGGC GCGGCGAGGA AGACCGCTAC TTCCAGACCG AACTCATCCC CGACCGCGAC
CAGGCCGGGC AGGTCCGCGG CTACTACGCC ATGACCTCCG ACGTGACCGA GCGCAAGCGC
ATCGAATTCA GCCTGGCCCA CAGCGAAGCG CAGGTTCGCG TCATTGCAGA CAACATCCCG
GCGCTGGTCT CGCACGTCGA TTCCTCGCTG AGATACACCT TCGTCAATGC CCAGGTGAAG
GCACTGCACA AGGACCGGGC CATGGTGGGG CAATTGATGC CGGAGGTTCG CGGCCCGTCG
GACTTTGCCA TCGTGGCGCC GGCCTACGAG CGTGCGCTGG CCGGCGAGAC GGTGGTGGTC
GAGAAATCCG GCGATCCGGC GCTGGGCATC GGCGAGCGCA CCTTCAAGGC CCACTACATT
CCCGACCGCG ACGCCAACGG CGTGGTGCAG GGCGTGTTCG CCATGACCTT CGACATCACC
GACGAGGTGA ACATACGCAG GGCCCTGACC GAGCAGGAGA AGCGGCTGCG CGATGTGACC
GACAGCATCC CGGCGCTGGT GGGCTATTTC GACAGCAAAG AGAACTGCCT CTTCGCCAAC
AGCCGCGCGC GGCAGATGGC GGGGCTGGGC AGCGGCCCGC TCGAGAACGT TACGCTGCGC
TCGGCGCTGG GCAAGGCGGT GCACCGTCAG ATCCGGCCCT ATCTTCCGCT GGTGCGCGAG
GGCAAGTCGG TGCGCTTTCC GGTGCATGCG CCGCTGCATG GAAAGGATGG CTTCTTCCAG
GTCAACCTGG TGGCCGACAT GGACCCGCAG GGCGGGCTCG TGGGCTTCTA TCTCATGACC
TTCAACATCA CCGCGCTCAA GCGCGCGGAG CTGCGGCAGG CCGAAAGCGA AAGGCGCCTG
CGCACCATCA CCGACAACCT GCCGGCACTC ATCACCTACA TCGACCGCGA CGAGAACATC
ACCTTCGCCA ATGCCACCTA CCGCGAATGG CTCGGCGTGG AGCCGGCCGA GATCCTGGGC
CGCCACGTCG GCGACGTCGC GGGCCCCGAG CTGTATCTCT CGCGCAAGGC CATGATCGCG
CGCGCACTGG CCGGCGAGCG CGTGGAGTTC GAGGCGCAGA CCAGGACCAA GGGCGCCGAC
CGCACCACCC GCGTGAGCTA CGTGCCCGAC ATCGGCCCCG ACGGCAGCAC GCGCGGCATC
TTCTCGCTGA GCCTGGACAT CAGCGCCCTG AAGGCGGTGG AGCGCAAGCT GATCGACCTG
GCGCGCATCG ACACCCTCAC CGGCCTTGCG AACCGGCTCG CCTTCAACGA GTTCCTGCCC
GGCGCCATCG CGCGCGCGCA GCGTTCGGGC AATGCGCTGG CGGTGCTGTT CCTCGACATC
GACTACTTCA AGACCATCAA CGACACGCTC GGCCATGCCA CAGGCGACGG CGTGCTGGTG
GAATATGCGC AGCGCCTGCT GGCCAGCGTG CGAAGCACCG ACACCGTGGC GCGGCTGGCG
GGCGACGAGT TCGTTGTCGT GCTGGAGAAC GTGCACACAC GGGAAGCCGC CGTGGCCGTC
GCGCGGAAGA TCGTGGAGCG GGTGGGCACC GTCCCCTTCG AGCTGGACGG CCGCAGCCTG
AACGTGACGA CCAGCATCGG CATTGCCTTC CACCAGGCCG CGGACGCCTC GGCCGGTGCC
GCCGACCTGC TGGCACGCGC CGACGCCGCG CTCTATCGCG CCAAGGCCGC GGGGCGCAAC
ACCTTCGGCT TCTCCGATTG A
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| Protein sequence | MKLPGLRNIR ISLNTRLGLG IAAVVLAATL AIATVALQLV KTSMKASIGS EAFARLSAIA
NTIDQKFVSR RTLLETFADS TALNEFPDTP ALQAFLEKHP SLRKAFSNVA FFTAEGDLVA
SLSGAQQPGK VNIKDRAYFQ QTLAARAGVI SEPYLNRLTG LAQIAMTEPV LDAAGNVRYV
ISGAINLKDR NILGELADLK FGETGYLFIT STEGVVIDHP RTERIINQTG LKGVGNPEIE
RPIDGYEGAT EGFNHAGVHG LYAFKRIPQT NWVLGSMYPS TEAFARVDAI ERSAWIGTVV
LAMLAGAAVL GFVRQQLTPL RHLHRHMLDV DNPALQTAVP RTYRHDEIGD LARTFDTLMQ
QRKSSEKFLR DITDNLPALV SHVDAQGRYT FVNAPLCRKL DRGAAQLIGR TAQNIGEDET
VDAAVRRVLA GEAVSFESRG EARRGEEDRY FQTELIPDRD QAGQVRGYYA MTSDVTERKR
IEFSLAHSEA QVRVIADNIP ALVSHVDSSL RYTFVNAQVK ALHKDRAMVG QLMPEVRGPS
DFAIVAPAYE RALAGETVVV EKSGDPALGI GERTFKAHYI PDRDANGVVQ GVFAMTFDIT
DEVNIRRALT EQEKRLRDVT DSIPALVGYF DSKENCLFAN SRARQMAGLG SGPLENVTLR
SALGKAVHRQ IRPYLPLVRE GKSVRFPVHA PLHGKDGFFQ VNLVADMDPQ GGLVGFYLMT
FNITALKRAE LRQAESERRL RTITDNLPAL ITYIDRDENI TFANATYREW LGVEPAEILG
RHVGDVAGPE LYLSRKAMIA RALAGERVEF EAQTRTKGAD RTTRVSYVPD IGPDGSTRGI
FSLSLDISAL KAVERKLIDL ARIDTLTGLA NRLAFNEFLP GAIARAQRSG NALAVLFLDI
DYFKTINDTL GHATGDGVLV EYAQRLLASV RSTDTVARLA GDEFVVVLEN VHTREAAVAV
ARKIVERVGT VPFELDGRSL NVTTSIGIAF HQAADASAGA ADLLARADAA LYRAKAAGRN
TFGFSD
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