| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1965 |
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| Symbol | |
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| ID | 7969758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2101326 |
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| End bp | 2102072 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792563 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_002943877 |
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| Protein GI | 239814967 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.616941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCATCG GAACAACGGC GGATGCCTGC TTTCCCGGCT TCGACAGCGG GTTCGTCATG
GCTTTCCAGC CGATCGTGGA TTTCCAGCGG CGCGAAGTGT TCGCGCACGA AGCCCTGGTG
CGCGGCACCT CGGGAGAGGG CGCCTTCGAG GTGCTCTCGC GCGTGAACCC GCGGCTGCGC
TTCGCCTTCC ACGAGGCCTG CCGCGTGAAG GCCATCGAAA CCGCTTCGGC GCTGGGCATG
GAGTCGCGGC TGAGCCTCAA CATCCTGCCC AACGACGTGG CGGGGCATCA GGACGAGTGC
TTCCACACCG CCATGCTGGC CGCGCAGCGC TGCAACTTTC CGGTGGACCA CCTGATGTTC
GAGATCACCG AAGGCGAACG CGTGGCGGAC CTGCCCGCGC TGGCGTCGGT GTTCCGCACC
TACAAGGACT ACGGCTTCAC CTCCGCCATC GACGACTTCG GCGCCGCCTA TGCGGGCTTC
GAGCTGCTGG CGGGCTTCCA GCCCGACGTG GTGAAGATCG ACATGGGCCT GGTGCGCAAC
ATCCACAACG ACGCGGTCCG GCTCAGCATC GTGAAGGGCT TCGTGGGCAC CTGCGGCGAA
CTCGGCATCC GCGTGGTGGC CGAAGGCGTC GAGGCCTCGG AAGAGGTCCA TGCGCTGCGC
GCGCTGGGCG TGGACCTGTT CCAGGGCTTC CTGTTTGCCA GGCCCGGCAT CGCCATGCTG
CCGGCCGTGG CGTGGGACGC GGCCTGA
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| Protein sequence | MTIGTTADAC FPGFDSGFVM AFQPIVDFQR REVFAHEALV RGTSGEGAFE VLSRVNPRLR
FAFHEACRVK AIETASALGM ESRLSLNILP NDVAGHQDEC FHTAMLAAQR CNFPVDHLMF
EITEGERVAD LPALASVFRT YKDYGFTSAI DDFGAAYAGF ELLAGFQPDV VKIDMGLVRN
IHNDAVRLSI VKGFVGTCGE LGIRVVAEGV EASEEVHALR ALGVDLFQGF LFARPGIAML
PAVAWDAA
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